Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr2g1878 ATGCTCAAAACCGAAAGCATTACTCTCTGGATCTACTTTCCTCTTCTACTTTGGGCTTTCCCGGCGTCTGGTGGCGGTTCAGACGGCGGAGCTCCGTCGCGGGAGGTGTGGTGCGTGGCGAAGAACAACGCGGAGGACGCGGCTCTACAGTCGGCGGTGGAGTGGGCCTGCAGTGTGGGCGGAGCCGATTGCGGAGCGATCCAAGGAGGAGGAGCGTGCTTCGACCCTTCCAGTGTACAGAATACGGCGTCGTACGCTTTCAACGACTATTTCAGAAAGCACGATATCTCTGATGAGAATTGCAACTTCGGCAACAACGCCGCCATCACCTCATTGAACCCCAGTTACGGTAATTGCAAGTTTCCTTCTAGGTAA 375 0.5547 MLKTESITLWIYFPLLLWAFPASGGGSDGGAPSREVWCVAKNNAEDAALQSAVEWACSVGGADCGAIQGGGACFDPSSVQNTASYAFNDYFRKHDISDENCNFGNNAAITSLNPSYGNCKFPSR* 125
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr2g1878 124 PANTHER BETA-1,3 GLUCANASE 25 122 IPR044788 -
Apr2g1878 124 Gene3D - 32 121 - -
Apr2g1878 124 Pfam X8 domain 37 107 IPR012946 -
Apr2g1878 124 PANTHER ELICITOR INDUCIBLE BETA-1,3-GLUCANASE-LIKE 25 122 - -
Apr2g1878 124 SMART X8_cls 36 121 IPR012946 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr2g1878 Apr-Chr2 24331478 24332088 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr2g1878 37 122 Glycoside Hydrolase AT4G34480 50.000 1.66e-24 94.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr2g1878 - - aprc:113855887 252.677
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr2g1878 2 24331478 24332088 Apr2g1878 2 24331478 24332088 ECH
Apr5g0150 5 1309550 1316177 Apr2g1878 2 24331478 24332088 PCT