Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g0305 ATGGCAAGTCAAACTAACCTCTCACGAAAGAGTATTTCGTCTTCGAAGAAACCCTCTGAATCAGGAGCGCTTCACTCTAATGCTCGAAAATCTATTTCGTCTTCGCGACCCATGGTATTAACAGGTGAGCGAACAGTGAAATCATTGCGACTTACAAAGGCCCTGACTGTACCTGAAACAACAACTGTCTATGAAGCTTGCCGTCGGATGGCTGCCCGCAGAGTGGATGCTTTATTACTAACTGATTCTAATGCTTTGCTCTGCGGAATCCTCACAGACAAGGATATTGCAACAAGAGTTATTGCCAAAGAGGTTAATCTTGAAGATACACCTGTTTCCAAAGTTATGACAAGGAATCCGGTATTTGTCCTTTCTGAAACTCTTGCTGTGGAAGCCCTCCAAAAAATGGTGCAAGGGAAATTCAGACATTTACCTGTGGTGGAGAATGGAGAAGTTTTGGCTTTACTTGACATAGCAAAGTGTTTGTATGATGCTATTGCCCGTATGGAAAGGGCAGCGGAGAAAGGAAAAGCAATTGCAGCAGCCGTTGAAGGAGTTGAAAAACATTGGGAGTCCAATACATCATTCATTGAGACTCTTAGGGAGCAGATATTCAAGCCATCACTGTCTACAATCATTCCTGAGAATTCAAAGCTTGTAACAGTTTCACCAACAGACTCAGTTCTGACAACAACAAAGAAGATGGTTGAACACCGCACAAGTTGTGCTGTTGTGGCAGTTGACAGTAAACCCCGTGGCATCTTTACTTCAAAGGATATCTTGATGCGGGTAATTGCACAAAATCTTCCTCCAGAGTCAACTCCTGTGGAGAAGGTCATGACTCCAAATCCAGAATGCGTAGTAATTGATACACCAATTGTTGATGCACTTCACACTATGCATGATGGAAAATTTTTGCATCTTCCTGTGGTTGATAGAGATGGCAGTGTAGTTGCTGTGGTTGATGTGATTCATGTCACTCATGCTGCTGTGGCGACAGTAAGTCAGGTTGGGAACAATGAAGCTGCTACCACCTTGATGCAAAGATTTTGGGATTCAGCCATGGCCCTAAATCCAAATGATGATGACGATGATACACGAAGTGACAGTTCCTTGAAAGTGGCTTCTGAGGGAGGAGAAACAGGGAGATCCATTCCATATCTTACATCAAGCATGCCCAATACATTTTCCTTCAAAATACAAGATAAGAAGGGCAGAATGCATAGATTTACGTGTGATACCCGGAGCATGACTGACGTTATGACTTCAATCCTTCAGAGACTTGGTGATGATATTGACCCTACCAACCTTCCCCAAATTCTGTACGAAGACGAAGATCATGATAAAGTTGTATTGGCTTCAGACAGTGATCTTGCAGCAGCTGTGGATCACGCAAGGACAGCTGGTTTGAAGGGATTGAAATTGCATTTAGACTCCGTAGGAGCCGCTGGTAAAGCGAGAGGTTCTCGTTCCGGAAATTATGCTACTTCAGATGCATGGGCCTCAGCATATAGTGCCGTTGCTGCAGGAGCTGCACTTGTTGCTGGCTTAGGCTTACTAACGTACTTGAAGCGAGTTTGA 1581 0.4396 MASQTNLSRKSISSSKKPSESGALHSNARKSISSSRPMVLTGERTVKSLRLTKALTVPETTTVYEACRRMAARRVDALLLTDSNALLCGILTDKDIATRVIAKEVNLEDTPVSKVMTRNPVFVLSETLAVEALQKMVQGKFRHLPVVENGEVLALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWESNTSFIETLREQIFKPSLSTIIPENSKLVTVSPTDSVLTTTKKMVEHRTSCAVVAVDSKPRGIFTSKDILMRVIAQNLPPESTPVEKVMTPNPECVVIDTPIVDALHTMHDGKFLHLPVVDRDGSVVAVVDVIHVTHAAVATVSQVGNNEAATTLMQRFWDSAMALNPNDDDDDTRSDSSLKVASEGGETGRSIPYLTSSMPNTFSFKIQDKKGRMHRFTCDTRSMTDVMTSILQRLGDDIDPTNLPQILYEDEDHDKVVLASDSDLAAAVDHARTAGLKGLKLHLDSVGAAGKARGSRSGNYATSDAWASAYSAVAAGAALVAGLGLLTYLKRV* 527
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g0305 526 MobiDBLite consensus disorder prediction 372 387 - -
Apr1g0305 526 CDD CBS_pair_MUG70_1 51 167 - -
Apr1g0305 526 PANTHER AMP-ACTIVATED PROTEIN KINASE, GAMMA REGULATORY SUBUNIT 20 514 - -
Apr1g0305 526 SUPERFAMILY CAD & PB1 domains 390 478 - -
Apr1g0305 526 Gene3D - 22 181 IPR046342 -
Apr1g0305 526 Gene3D - 185 342 IPR046342 -
Apr1g0305 526 MobiDBLite consensus disorder prediction 1 37 - -
Apr1g0305 526 MobiDBLite consensus disorder prediction 357 387 - -
Apr1g0305 526 CDD PB1_MUG70 396 479 - -
Apr1g0305 526 ProSiteProfiles CBS domain profile. 50 110 IPR000644 -
Apr1g0305 526 ProSiteProfiles CBS domain profile. 280 341 IPR000644 -
Apr1g0305 526 ProSiteProfiles CBS domain profile. 116 174 IPR000644 -
Apr1g0305 526 PANTHER CBS/OCTICOSAPEPTIDE/PHOX/BEMP1 (PB1) DOMAIN PROTEIN 20 514 - -
Apr1g0305 526 SUPERFAMILY CBS-domain pair 43 159 IPR046342 -
Apr1g0305 526 Pfam CBS domain 51 98 IPR000644 -
Apr1g0305 526 Pfam CBS domain 216 262 IPR000644 -
Apr1g0305 526 Pfam CBS domain 276 326 IPR000644 -
Apr1g0305 526 Pfam CBS domain 112 155 IPR000644 -
Apr1g0305 526 Pfam PB1 domain 395 478 IPR000270 GO:0005515
Apr1g0305 526 ProSiteProfiles PB1 domain profile. 393 480 IPR000270 GO:0005515
Apr1g0305 526 SUPERFAMILY CBS-domain pair 218 330 IPR046342 -
Apr1g0305 526 SMART cbs_1 218 265 IPR000644 -
Apr1g0305 526 SMART cbs_1 119 163 IPR000644 -
Apr1g0305 526 SMART cbs_1 53 101 IPR000644 -
Apr1g0305 526 SMART cbs_1 283 331 IPR000644 -
Apr1g0305 526 SMART PB1_new 395 480 IPR000270 GO:0005515
Apr1g0305 526 ProSiteProfiles CBS domain profile. 212 272 IPR000644 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr1g0305 Apr-Chr1 3566042 3572185 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g0305 - - gmx:100785816 791.956
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr1g0305 1 3566042 3572185 Apr2g1167 2 17911431 17916122 PCT