Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr2g1161 ATGGGCGAGGAAGAAAAGAAAGCAGAGGAAAGCAAAGTGGAGGAGAAAAAAGAAGCAGGGGAAGCAAAGGCGGAAGAAGAGAAGAAAGAGGTTAAAGAGGAAGCCAAAAAAGCGGAAAAACCGGAGGAAACAAAGGAACAAGGTGCGCCGCCAGAAATTGTGCTTAAAGTGTTCATGCATTGCGAAGGTTGTGCTCGCAAGGTTCGTCGCTCCCTCAAAGGATTCCCAGGGGTTGAGGATGTAGTCACGGATTGCAAAACTCACAAGGTGGTTGTTAAAGGAGAAAAAGCGGATCCGCTGAAGGTTCTAGAGAGAATACAGAGAAAGAGCCATAGACAGGTCGAGCTTCTTTCTCCCATCCCAAAGCCACCAGCGGAAGAGGAGAAGAAGAAGCCACAAGAGGAAGAGAAGCCAAAGCCAGAGGAGAAGAAAGATGAGCCTCAGGTCATCACTGTTGTTCTTAAAGTTCACATGCATTGCGAAGCCTGCGCTCAGGAAATCAAGAGACGCATAGAGAGAATGAAAGGGGTAGAATTAGCGGAACCGGATCTGAAGAAGTCGCAGGTGAGTGTGAAAGGAGCGTTTGAGACAGAGAAGTTGGTGGAATACGTGTACAAGAGGACAGGGAAGCAAGCAGTGATAGTGAAGGAAGAGGCAGAAAAAAAAGAGGAAGAGAAAGAAGCGAAAGGGGAGAAGAAGGCAGAGGAAGGTGACAAGGGTGGAGAGAAGGGAAGTGGTGAAGGAGAGGAAAAGAAGAAAGAAGGGGAAGAGGGTGAGTCCAAAGGAAGCGAGGGAGGCACAACAGAAGAAACGACGAAGGTGGTGGAGCTGAAGAAGAATGAGTATTATTACAACCCACCAAGGTACGGCATGGACTTCTATGCATACCCTGGCCCAGGATACCCGCCCCAGATCTTCAGTGATGAGAACCCCAATGCCTGCTCTGTCATGTAA 954 0.4864 MGEEEKKAEESKVEEKKEAGEAKAEEEKKEVKEEAKKAEKPEETKEQGAPPEIVLKVFMHCEGCARKVRRSLKGFPGVEDVVTDCKTHKVVVKGEKADPLKVLERIQRKSHRQVELLSPIPKPPAEEEKKKPQEEEKPKPEEKKDEPQVITVVLKVHMHCEACAQEIKRRIERMKGVELAEPDLKKSQVSVKGAFETEKLVEYVYKRTGKQAVIVKEEAEKKEEEKEAKGEKKAEEGDKGGEKGSGEGEEKKKEGEEGESKGSEGGTTEETTKVVELKKNEYYYNPPRYGMDFYAYPGPGYPPQIFSDENPNACSVM* 318
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr2g1161 317 SUPERFAMILY HMA, heavy metal-associated domain 150 214 IPR036163 GO:0046872
Apr2g1161 317 ProSiteProfiles Heavy-metal-associated domain profile. 158 214 IPR006121 GO:0046872
Apr2g1161 317 CDD HMA 59 115 IPR006121 GO:0046872
Apr2g1161 317 Coils Coil 214 236 - -
Apr2g1161 317 MobiDBLite consensus disorder prediction 112 148 - -
Apr2g1161 317 MobiDBLite consensus disorder prediction 215 276 - -
Apr2g1161 317 PANTHER HEAVY METAL-ASSOCIATED ISOPRENYLATED PLANT PROTEIN 3-LIKE 1 317 - -
Apr2g1161 317 PANTHER HEAVY METAL-ASSOCIATED ISOPRENYLATED PLANT PROTEIN 7 1 317 IPR044577 GO:0046872
Apr2g1161 317 SUPERFAMILY HMA, heavy metal-associated domain 54 109 IPR036163 GO:0046872
Apr2g1161 317 Coils Coil 5 41 - -
Apr2g1161 317 MobiDBLite consensus disorder prediction 122 148 - -
Apr2g1161 317 Gene3D - 50 122 - -
Apr2g1161 317 MobiDBLite consensus disorder prediction 1 53 - -
Apr2g1161 317 CDD HMA 153 212 IPR006121 GO:0046872
Apr2g1161 317 Gene3D - 146 215 - -
Apr2g1161 317 MobiDBLite consensus disorder prediction 1 49 - -
Apr2g1161 317 Pfam Heavy-metal-associated domain 55 109 IPR006121 GO:0046872
Apr2g1161 317 Pfam Heavy-metal-associated domain 154 209 IPR006121 GO:0046872
Apr2g1161 317 ProSiteProfiles Heavy-metal-associated domain profile. 59 115 IPR006121 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr2g1161 Apr-Chr2 17862086 17863912 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr2g1161 - - gmx:100796289 323.553
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr1g0311 1 3689628 3691578 Apr2g1161 2 17862086 17863912 ECH
Apr2g1161 2 17862086 17863912 Apr2g1161 2 17862086 17863912 ECH
Apr2g1161 2 17862086 17863912 Apr1g0311 1 3689628 3691578 PCT