Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g0311 ATGGGGGAGGAAGAAAAGAAACCAGAGGAGAAAATACCTGAGACAGAAGAAAAGAAGAAAGAAGAAAAGCCAGAAGAAGCCAAACCAGCGGAGAAACCGGAAGAACCGAAAGAATCCAAAACCGAAGCTGCTCCACCACCGCCACCGCCAGAGATTGTGCTCAAAGTGTTCATGCATTGCGAAGGTTGCGCTCGCAAGGTTCGTCGCTCCCTCAAACGATTCCCAGGAGTTGAAGATGTCGTCACTGATTGCAAATCTCACAAGGTTGTTGTTAAGGGTGAAAAAGCGGATCCATTGAAGGTTTTGGAGAGAGTACAGAGGAAGAGTCACAGACAGGTTGAGCTTCTTTCTCCGATCCCCAAACCTCCCGAGGAGAACAAAGCCCAAGAAGAAGAGAAGCCCAAGCCCAAGCCCGAACCCGAAGAGAAGAAAGAAGAGCCTCAGATTGTGACGGTTCTGAAAGTTCACATGCATTGCGAAGCTTGCGCCCAGGAAATCAAGAGACGCATACAGAGAATGAAGGGAGTGGAATCAGCAGAACCGGATCTGAAGAACTCGGAAGTGAGCGTGAAGGGCGCGTACGATCCTGCGATGTTGGTTCAATACGTGTACAAGCGAACTGGGAAACAGGCAATGATAGTGAAGCAAGAGGCGGAGAAGAAAGAGAAAGTGGAAGAAGCGAAAGAAGGGAAAGAAGAGGAAGGTGAGAAAGAGAAGAAGGGTGGTGAAGAGGAGGAAAAGAAAGAGAAGAAAGAAGAAGAAGAAGGAGGAGGAGGAAAAGGAGAAGGGAAAGTAGAGGAAGAGGCAGCACCTGGTGAAGAGAACAACAAGGTTGGAGAGGTGAAGATAAACGAATACTTCTATAACCCGCCGAGGTATGGGATGGAGGTGTATGCATGCCCAGCATCAGTAGTGTACCCTGCTGCATATTACCAACAGTACCCACCGCAGATGTTCAGCGATGAGAACCCAAATGCTTGCAGTGTGATGTAA 993 0.4854 MGEEEKKPEEKIPETEEKKKEEKPEEAKPAEKPEEPKESKTEAAPPPPPPEIVLKVFMHCEGCARKVRRSLKRFPGVEDVVTDCKSHKVVVKGEKADPLKVLERVQRKSHRQVELLSPIPKPPEENKAQEEEKPKPKPEPEEKKEEPQIVTVLKVHMHCEACAQEIKRRIQRMKGVESAEPDLKNSEVSVKGAYDPAMLVQYVYKRTGKQAMIVKQEAEKKEKVEEAKEGKEEEGEKEKKGGEEEEKKEKKEEEEGGGGKGEGKVEEEAAPGEENNKVGEVKINEYFYNPPRYGMEVYACPASVVYPAAYYQQYPPQMFSDENPNACSVM* 331
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g0311 330 CDD HMA 152 211 IPR006121 GO:0046872
Apr1g0311 330 MobiDBLite consensus disorder prediction 217 280 - -
Apr1g0311 330 Gene3D - 146 213 - -
Apr1g0311 330 MobiDBLite consensus disorder prediction 1 52 - -
Apr1g0311 330 MobiDBLite consensus disorder prediction 107 147 - -
Apr1g0311 330 PANTHER HEAVY METAL-ASSOCIATED ISOPRENYLATED PLANT PROTEIN 7 1 330 IPR044577 GO:0046872
Apr1g0311 330 Pfam Heavy-metal-associated domain 54 107 IPR006121 GO:0046872
Apr1g0311 330 Pfam Heavy-metal-associated domain 153 198 IPR006121 GO:0046872
Apr1g0311 330 PANTHER HEAVY METAL-ASSOCIATED ISOPRENYLATED PLANT PROTEIN 7 1 330 - -
Apr1g0311 330 ProSiteProfiles Heavy-metal-associated domain profile. 157 213 IPR006121 GO:0046872
Apr1g0311 330 CDD HMA 58 114 IPR006121 GO:0046872
Apr1g0311 330 MobiDBLite consensus disorder prediction 217 281 - -
Apr1g0311 330 MobiDBLite consensus disorder prediction 1 41 - -
Apr1g0311 330 SUPERFAMILY HMA, heavy metal-associated domain 149 212 IPR036163 GO:0046872
Apr1g0311 330 Coils Coil 213 234 - -
Apr1g0311 330 ProSiteProfiles Heavy-metal-associated domain profile. 58 114 IPR006121 GO:0046872
Apr1g0311 330 SUPERFAMILY HMA, heavy metal-associated domain 53 108 IPR036163 GO:0046872
Apr1g0311 330 Gene3D - 49 121 - -
Apr1g0311 330 MobiDBLite consensus disorder prediction 124 147 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr1g0311 Apr-Chr1 3689628 3691578 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g0311 - - gmx:100787932 325.865
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr1g0311 1 3689628 3691578 Apr2g1161 2 17862086 17863912 ECH
Apr1g0311 1 3689628 3691578 Apr1g0311 1 3689628 3691578 ECH
Apr2g1161 2 17862086 17863912 Apr1g0311 1 3689628 3691578 PCT