Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr2g1139 ATGGCAGAGATTCAGCCGCCGGAGGGACAATTAAACGGCGGCGGAACCCTAATTCTGAATTCTTCCGAACCAATCGCATCGAAGCGGCAGCGAAGGCCCAGTGTCCGGTTGGAAGACATCGGCGGCGACCAACCCTACGATTCCCACGCGCGTCGCAACACAAAGTCTTGGAAACTCGGGTTCGACCGTAGGGACAAGGAAGCCTCAGGTAAACCCTCAAAGACTCGACCTTTAACCAATTTAAGCGAGTTTAACGAAACCCTAGAAGCAAACGAGAGAGAAGGGAACATTGATAGCGTCGCAATCGGTAGCTGGAAGGTCAAGGAATCCAAGAAGAGGGCTTCCAAGAGGGTCAGATCGAATTGGGTATCGAGAATCGACGACGATGGTGGTGGCGGCGGCGGCGGCGGAGAGGGGGAGGAAAAGTATAGCGCCGGTGAAGATGGGGATGATGGGTATAGGGGGTTTGACGTGGAGAATTCGGAAAGCCCTCTGAAAGAACAAAGCCCTATTAATTCAATGGAGAATTTTGGGGTTGAGGGGCATAGAAGGTCGTTTAAGGGTAGGGAGCACCATGAAGGGGTTGATGTGTCAGTGCCCTCCGATACTGATGTTAGGGATTGGAAATGTGGGGATAGAAGGTCTGGTGAAGATGGGGTTAGGATTTGGCTTAATGGGTTGGGGTTAGGTCGTTATGCTCCTGTGTTTGAAGTGCATGAGGTGGATGATGAGGTTTTGCCTATGCTGACTCTAGAGGATCTCAAGGATATGGGGATTAGTGCTGTTGGGTCCAGAAGGAAAATGTACACTGCAATTCAGAAGCTTGGAAAGGGATTCTCCTGA 843 0.5113 MAEIQPPEGQLNGGGTLILNSSEPIASKRQRRPSVRLEDIGGDQPYDSHARRNTKSWKLGFDRRDKEASGKPSKTRPLTNLSEFNETLEANEREGNIDSVAIGSWKVKESKKRASKRVRSNWVSRIDDDGGGGGGGGEGEEKYSAGEDGDDGYRGFDVENSESPLKEQSPINSMENFGVEGHRRSFKGREHHEGVDVSVPSDTDVRDWKCGDRRSGEDGVRIWLNGLGLGRYAPVFEVHEVDDEVLPMLTLEDLKDMGISAVGSRRKMYTAIQKLGKGFS* 281
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr2g1139 280 ProSiteProfiles SAM domain profile. 215 278 IPR001660 GO:0005515
Apr2g1139 280 MobiDBLite consensus disorder prediction 1 84 - -
Apr2g1139 280 PANTHER SCP160 23 280 - -
Apr2g1139 280 SUPERFAMILY SAM/Pointed domain 216 275 IPR013761 -
Apr2g1139 280 CDD SAM_superfamily 220 274 - -
Apr2g1139 280 MobiDBLite consensus disorder prediction 141 161 - -
Apr2g1139 280 Pfam SAM domain (Sterile alpha motif) 219 275 IPR001660 GO:0005515
Apr2g1139 280 MobiDBLite consensus disorder prediction 108 172 - -
Apr2g1139 280 PANTHER - 23 280 - -
Apr2g1139 280 MobiDBLite consensus disorder prediction 29 72 - -
Apr2g1139 280 MobiDBLite consensus disorder prediction 14 28 - -
Apr2g1139 280 SMART SAM_4 212 278 IPR001660 GO:0005515
Apr2g1139 280 Gene3D - 214 275 IPR013761 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr2g1139 Apr-Chr2 17653342 17656890 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr2g1139 - - aprc:113856178 547.354
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr1g0332 1 4005688 4007147 Apr2g1139 2 17653342 17656890 ECH
Apr2g1139 2 17653342 17656890 Apr2g1139 2 17653342 17656890 ECH