Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr2g1120 ATGGAACTGCAGCAGAACGACGTCGTTGTGAATGGCAGGGATGAACACGAGGAAGCATTGCTGGCTCTCATACTACACCGCACCCGTGAAGTCAAAAGCCTTCGTTACTACATCTCCTATTACACTTCTCAGCTTGAAGAAGCAGAAGCAAGGTTGCAAGAATCTAAAGCTAAATTAGCTCACTTTAAAGGCACTAGTGCAAGTTTACTAGATGTTGAAACTAAATCTTTGAAGATAGAGCATGGACCAAAAGGTGCCATTCATAAAAATGAAGGTTCCTCCAACAACTACCATAATACTACTTATAAGTCCAGGGAAGTTTCTAGTGATATGGAAAATGTTGAAGTCAAGGAAAGAGGGATCAAAAGGAAGTTTGGGCAGAAAGAGCACAAGGAATTGGCTGCTTTAGTATGTAAGAGTTCTTCCCCAGGCTCTGTCAATTATCAAGCAAGCAATCACTTCTCAAGTCTGCACAAGAGGAAATTGCGATGTATTGCTCTCTGTCCTGTGAATGATCAGCGTTTTGTGACCAGTGCTTTAGATGGTGTGGTCAACATGTGGGAAGTTCAATCTTCGGGATCAGGAGCCTCTTTGCGTAGAACTATTGATTGTGTATCCCCAAAGCAAAGGAGATGGCCAGAAGATATAGCGTGGCACCCAGAGGGAAATCGCCTGTTTTCAGTGTATACTGGTGACAATCAAGACTCTCAAATATCAGTTACAGATTTGAGTAAAGAACAAGGAGGAGGGAGAGCACATATCAATTTCTTAGAGGACAAGCCTCATGTTAAGGGTGTTATCAATAGCATTGTTTTTCTGCCCTGGGGAAATACCAGTTTTGTAACTGGAGGAACTGACCATGCTGTTATACTGTGGAGTGAGAATGGTGAGAACAAATGGAAGCCGAAATCATTGCATAGGAATTTTCATACTTCTGCTGTCATGGGAGTTGCTGGTATGCAGCAGAAGCAACTCGTATTGTCTGCTGGTAAAGACAAGAGAGTTTTGGGGTATGATGCTCATGTAGGAAGGCAAAATTTCATGCATCTGGTTGAGAGTAAATGCTTGAGTGTACTGCCAAATTCATGTGACTTCAATTTATTCATGGTTCAAACTGGGACCCCAGAGAGGCAGCTTCGACTATTTGATATTAGATCAAAAGGGACAGAACTTCATGCTTTTGGATGGAAGCAAGAAAGCAGTGAATCTCAGTCAGCACTGATAAATCAGGCTTGGTCCCCCAATGGACTGTACATAACATCTGGTTCAGCTGATCCTATGATTCATATATTTGATATTAGATATAATAGTCGCAAGCCTTGCCAATCTATAGAAGCTCATCAGAAACGAGTCTTCAGAGCTATGTGGCTTCAATCTGTTCCCCTTCTGATTTCCATATCATCTGATCTCAACATTGGGTTACACAAAGTTGTGTAG 1437 0.4196 MELQQNDVVVNGRDEHEEALLALILHRTREVKSLRYYISYYTSQLEEAEARLQESKAKLAHFKGTSASLLDVETKSLKIEHGPKGAIHKNEGSSNNYHNTTYKSREVSSDMENVEVKERGIKRKFGQKEHKELAALVCKSSSPGSVNYQASNHFSSLHKRKLRCIALCPVNDQRFVTSALDGVVNMWEVQSSGSGASLRRTIDCVSPKQRRWPEDIAWHPEGNRLFSVYTGDNQDSQISVTDLSKEQGGGRAHINFLEDKPHVKGVINSIVFLPWGNTSFVTGGTDHAVILWSENGENKWKPKSLHRNFHTSAVMGVAGMQQKQLVLSAGKDKRVLGYDAHVGRQNFMHLVESKCLSVLPNSCDFNLFMVQTGTPERQLRLFDIRSKGTELHAFGWKQESSESQSALINQAWSPNGLYITSGSADPMIHIFDIRYNSRKPCQSIEAHQKRVFRAMWLQSVPLLISISSDLNIGLHKVV* 479
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr2g1120 478 SUPERFAMILY WD40 repeat-like 160 474 IPR036322 GO:0005515
Apr2g1120 478 PANTHER TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN 11 100 - -
Apr2g1120 478 PANTHER TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN 104 477 - -
Apr2g1120 478 MobiDBLite consensus disorder prediction 89 107 - -
Apr2g1120 478 Coils Coil 38 65 - -
Apr2g1120 478 MobiDBLite consensus disorder prediction 83 113 - -
Apr2g1120 478 Gene3D - 354 478 IPR015943 GO:0005515
Apr2g1120 478 SMART WD40_4 387 432 IPR001680 GO:0005515
Apr2g1120 478 SMART WD40_4 437 476 IPR001680 GO:0005515
Apr2g1120 478 SMART WD40_4 201 242 IPR001680 GO:0005515
Apr2g1120 478 SMART WD40_4 301 339 IPR001680 GO:0005515
Apr2g1120 478 SMART WD40_4 253 293 IPR001680 GO:0005515
Apr2g1120 478 SMART WD40_4 147 188 IPR001680 GO:0005515
Apr2g1120 478 Pfam WD domain, G-beta repeat 409 432 IPR001680 GO:0005515
Apr2g1120 478 PANTHER TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN 104 477 - -
Apr2g1120 478 PANTHER TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN 11 100 - -
Apr2g1120 478 Gene3D - 26 353 IPR015943 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr2g1120 Apr-Chr2 17472888 17477077 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr2g1120 - - aprc:113855723 959.903
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr2g1120 2 17472888 17477077 Apr2g1120 2 17472888 17477077 ECH
Apr2g1120 2 17472888 17477077 Apr1g0349 1 4277092 4288222 PCT