Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g0349 ATGGAGCAGAATGAGAATGGAAGCACTACGAGCAAGGAGGAACAGGAAGAGGCATTGGTGGCTTTGATCGAACATCGTACCCACGAAGTAAAAAACTTCCGTCACCGCATTGCTTATTACAAAACTCAGCTTGAGGAAGCAGAGAAAAGGTTGCAAGATTCTGAATCCAAATTGGCTCGCCTTCGAGGTCAAAGTAATGCAGTGTTGGGTAAAAGTAGCTTAAATGATGGGATTAAAATTGTGAAGACAGAGTGCAGATCAAACAGTCCCATTGATAGAAATGAAGGTTCTTACAAAAACCAGAATCAATCTAAACCAGAACTTCTTATTCCTTCAGTGAATCCAAAAATTTCACAACCTGTACTGTTGCAAAGGTCTTCTGCAAAAGCTTCAATAAATTCCAGTTCTGAAGCCAGTCCAGTGGTCCATACTTCTCCAATCACTGGTAGTAGCTCTAGGGCGAAATCTGATAAGTCTCATAGTCATAGACTTTCTTCTGAGCAGCAAAAAGTTGAAATCAAGGACAAAGGAACAAAAAGAAAATATGATCAAAAAGAGCACAAGGAATTGATTCCTTTAATACGTAAGAGTTCTTCACCAAGCTTGTTACACTGTCAAACAAGCAATCACATCTCAAGCCAACACAAGAGGAAATTGCGGAGTATTGCTTTGTGTCCTGTGAATGATCAACTCTTTGTGACCAGTGCTTTGGATGGGGCGGTCAACTTGTGGCAAATTCAGTCTAAGGGATCAGGAGCCTCTCTACTTAGTACTACTGATTGTGTATCTGCAAAGCATAGGAGATGGCCAGAAGATTTAGCTTGGCACCCAGAAGGAAACAACATATTTTCAGTATACAGTGCTGATGGTGGAGATTCTCAAGTATCAGTTACAAATCTGAATAGAGGACAAGGGGGAGATCGTGTAAAATTCTTAGAGGACAAGCCACACGTTAAGGGAATTATCAATGGCATTGTTTTTATGCCCTGGGAAAATACATGTTTTGTAACTGGCGGAAGTGACCATGCTGTCATACTTTGGAGTGAGCAAGATGGTGAGAATAAGTGGAAGCCAAAAGCATTGCACAGGAATCTTCATTCTTCTGCTGTCATGGGAGTTGCTGGTATGCAGCAGAAGCAGATAGTGCTCTCTGCTGGTGCAGACAGGAGAATATTTGGGTATGATGTTCGTGTAGGAAGAGCAGATTTCAAGCATCAGATTGATAGTAAATGCATGAGTGTCCTTCCCAATCCATGTGATTTCAACTTATTCATGGTTCAAACAGGGACCCATGAGAAGCAGCTTCGGTTATTCGATATTCGGTTAAGGCAGACAGAACTACATGCTTTTGGATGGAAGCAAGAAAGTAGTGACTCTCAATCCGCCCTCATAAATCAGGCTTGGTCTCCTGATGGACTATATATAACATCCGGTTCAGCAGATCCTGTGATTCACATATTTGATATTAGGTATAATTCTCACAAGCCTGCCCAGTCCATAAGAGCGCATCAGAAACGTGTCTTCAGAGCCATGTGGCTTCAGTCTGTTCCTCTTCTCATTTCCATATCATCTGATCTAAACATTGGATTGCACAAGGTTTACTAG 1605 0.4168 MEQNENGSTTSKEEQEEALVALIEHRTHEVKNFRHRIAYYKTQLEEAEKRLQDSESKLARLRGQSNAVLGKSSLNDGIKIVKTECRSNSPIDRNEGSYKNQNQSKPELLIPSVNPKISQPVLLQRSSAKASINSSSEASPVVHTSPITGSSSRAKSDKSHSHRLSSEQQKVEIKDKGTKRKYDQKEHKELIPLIRKSSSPSLLHCQTSNHISSQHKRKLRSIALCPVNDQLFVTSALDGAVNLWQIQSKGSGASLLSTTDCVSAKHRRWPEDLAWHPEGNNIFSVYSADGGDSQVSVTNLNRGQGGDRVKFLEDKPHVKGIINGIVFMPWENTCFVTGGSDHAVILWSEQDGENKWKPKALHRNLHSSAVMGVAGMQQKQIVLSAGADRRIFGYDVRVGRADFKHQIDSKCMSVLPNPCDFNLFMVQTGTHEKQLRLFDIRLRQTELHAFGWKQESSDSQSALINQAWSPDGLYITSGSADPVIHIFDIRYNSHKPAQSIRAHQKRVFRAMWLQSVPLLISISSDLNIGLHKVY* 535
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g0349 534 Gene3D - 7 414 IPR015943 GO:0005515
Apr1g0349 534 Pfam WD domain, G-beta repeat 465 488 IPR001680 GO:0005515
Apr1g0349 534 PANTHER TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN 4 533 - -
Apr1g0349 534 Gene3D - 417 534 IPR015943 GO:0005515
Apr1g0349 534 Coils Coil 30 64 - -
Apr1g0349 534 MobiDBLite consensus disorder prediction 132 154 - -
Apr1g0349 534 ProSiteProfiles Trp-Asp (WD) repeats profile. 212 248 IPR001680 GO:0005515
Apr1g0349 534 SUPERFAMILY WD40 repeat-like 217 530 IPR036322 GO:0005515
Apr1g0349 534 MobiDBLite consensus disorder prediction 90 109 - -
Apr1g0349 534 PANTHER TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN 4 533 - -
Apr1g0349 534 MobiDBLite consensus disorder prediction 88 111 - -
Apr1g0349 534 MobiDBLite consensus disorder prediction 155 187 - -
Apr1g0349 534 MobiDBLite consensus disorder prediction 132 187 - -
Apr1g0349 534 SMART WD40_4 451 488 IPR001680 GO:0005515
Apr1g0349 534 SMART WD40_4 493 532 IPR001680 GO:0005515
Apr1g0349 534 SMART WD40_4 355 395 IPR001680 GO:0005515
Apr1g0349 534 SMART WD40_4 257 299 IPR001680 GO:0005515
Apr1g0349 534 SMART WD40_4 199 245 IPR001680 GO:0005515
Apr1g0349 534 SMART WD40_4 305 348 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr1g0349 Apr-Chr1 4277092 4288222 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g0349 - - gmx:100799587 927.161
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr2g1120 2 17472888 17477077 Apr1g0349 1 4277092 4288222 PCT