Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr2g1092 ATGGCTGAGGAGGCTCCAAAGCAAACAAGCACAACACAAGAGTCAGTGGTGCAAGTGGAGGAAGTGGTGGTAACTCATGTTCCTCAACCTGACAAAACCCCCACTGTAGAGAAAGATCCTCAACCTGAGCCAGAGAAGAAGAAGCCCGTTGAGGAAACTGTGACTCTTGAGACTCACCTGTCCAAACCCAATAGTGACGACACCAACAATGATGACAAAATCCCCGAATCTTGTTCCTTCAAGGAAGAAAGTACCAAACTTTCTGACCTCCCCGAGAATGAAAACAAGTCACTCCAAGAGCTCAAACACCTCATTCAAGAAGCACTCAACAAGCACGAGTTTTCTTCCCCTAACAATCCACCCAAAGAAGAAAAGCCACCAGCTTTAACTGCAGACAAGGAAGGGAAAGAGCCCCATGAGGAACAAGTTCCTGAACCGGTTGAAACTGTTGCAGCCACAGCAGAAGAACCTGTACAAAAAACTGAGGAGGAGCAAGTTGCCAAACAAACAGAAGAAGAAGAAGGAGAGAAGAAAGAAGAAGTGAAAGAAACTGAGGTTGCTAATGCTGATGCTGATGCTGCTCCATCTGTGGATGATGATGGAGCAAAAACTGTGGAGGCCATTGAAGAGACCGTTGTTGCTGTCTCTTCTTCTGTTCCTACAGAGGAGCCTCCATCTACAGAGAAAGCTTCTGAAACAGAAGCAAAGGATGAAGCTTCAGTTCCATTGCCACCTGAAGAAGTATCCATTTGGGGGATACCGCTGCTTAAAGATGACAGGAGCGATGTGATTCTGTTGAAGTTTCTGCGTGCCAGAGACTTCAAGGTGAAGGAGGCATTCACCATGATCAAGAACACAATCCGGTGGAGGAAGGAATTTGGAATGGAAGAGTTGATGGAGGAGAAGCTCGGTGATGAGTTGGAGAAAGTGGTGTTCATGCATGGATTCGACAAGGAGGGCCACCCTGTGTGTTACAACATATATGGAGAGTTCCAGAACAAGGAGTTGTACAAGAAGACTTTTTCTGATGAGGAGAAGAGAGAAAAATTCCTGAGATGGAGAATTCAGTTCCTTGAGAAGAGTATAAGGAAGTTGGATTTCAACCCTGGTGGCATTTGCACCATCGTTCAAGTCAATGATCTCAAGAACTCTCCTGGACCTGGCAAGTGGGAACTTAGACAAGCCACCAAACACGCTCTTCAATTGCTTCAGGACAATTATCCTGAATTTGTGGCCAAACAGGTATTTATCAATGTGCCATGGTGGTACCTGGCAGTGAATAGGATGATAAGCCCTTTCCTTACTCAGAGAACCAAAAGCAAGTTTGTCTTTGCTGGGCCTTCCAAATCAACTGAGACCCTTTTGAGATACATAGCTCCGGAGCAGCTTCCGGTAAAATATGGTGGCCTAAGCAAAGATGGAGAATTCGGAAATACCGATGCTGTTACAGAAATCACAGTAAGGCCAGCAGCAAAACATACCGTGGAGTTTTCTGTTACTGAGAACTGCTTACTCTCTTGGGAGCTGAGAGTAATAGGGTGGGAAGTAAGCTATGGTGCAGAATTTGTGCCTAGTTCAGAAGGAAGCTATACAGTAATTGTGCAAAAGGCTAGAAAGGTTGCATCATCAGAAGAACCAGTGCTATGCAACAGTTTTAAAGTAGGTGAACCGGGGAAAGTTGTTCTCACCATTGACAATCAAAGTTCTAAGAAGAAGAAGCTCTTGTACCGTTTGAAGACCAAGCCTTCCCCCTCTGACTGA 1761 0.4532 MAEEAPKQTSTTQESVVQVEEVVVTHVPQPDKTPTVEKDPQPEPEKKKPVEETVTLETHLSKPNSDDTNNDDKIPESCSFKEESTKLSDLPENENKSLQELKHLIQEALNKHEFSSPNNPPKEEKPPALTADKEGKEPHEEQVPEPVETVAATAEEPVQKTEEEQVAKQTEEEEGEKKEEVKETEVANADADAAPSVDDDGAKTVEAIEETVVAVSSSVPTEEPPSTEKASETEAKDEASVPLPPEEVSIWGIPLLKDDRSDVILLKFLRARDFKVKEAFTMIKNTIRWRKEFGMEELMEEKLGDELEKVVFMHGFDKEGHPVCYNIYGEFQNKELYKKTFSDEEKREKFLRWRIQFLEKSIRKLDFNPGGICTIVQVNDLKNSPGPGKWELRQATKHALQLLQDNYPEFVAKQVFINVPWWYLAVNRMISPFLTQRTKSKFVFAGPSKSTETLLRYIAPEQLPVKYGGLSKDGEFGNTDAVTEITVRPAAKHTVEFSVTENCLLSWELRVIGWEVSYGAEFVPSSEGSYTVIVQKARKVASSEEPVLCNSFKVGEPGKVVLTIDNQSSKKKKLLYRLKTKPSPSD* 587
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr2g1092 586 Gene3D - 232 292 - -
Apr2g1092 586 ProSiteProfiles CRAL-TRIO lipid binding domain profile. 300 475 IPR001251 -
Apr2g1092 586 PANTHER PATELLIN-3 PROTEIN 1 586 - -
Apr2g1092 586 Pfam CRAL/TRIO, N-terminal domain 246 285 IPR011074 -
Apr2g1092 586 Pfam CRAL/TRIO domain 309 469 IPR001251 -
Apr2g1092 586 Gene3D GOLD domain 486 580 - -
Apr2g1092 586 SUPERFAMILY CRAL/TRIO domain 310 472 IPR036865 -
Apr2g1092 586 SUPERFAMILY CRAL/TRIO N-terminal domain 74 301 IPR036273 -
Apr2g1092 586 MobiDBLite consensus disorder prediction 213 243 - -
Apr2g1092 586 MobiDBLite consensus disorder prediction 126 144 - -
Apr2g1092 586 ProSiteProfiles GOLD domain profile. 479 580 IPR009038 -
Apr2g1092 586 SMART CRAL_TRIO_N_2 261 286 IPR011074 -
Apr2g1092 586 MobiDBLite consensus disorder prediction 227 241 - -
Apr2g1092 586 CDD SEC14 306 470 IPR001251 -
Apr2g1092 586 MobiDBLite consensus disorder prediction 24 199 - -
Apr2g1092 586 MobiDBLite consensus disorder prediction 157 187 - -
Apr2g1092 586 Gene3D - 295 485 IPR036865 -
Apr2g1092 586 PANTHER PATELLIN-1 1 586 IPR044834 GO:0008289
Apr2g1092 586 MobiDBLite consensus disorder prediction 64 109 - -
Apr2g1092 586 Coils Coil 160 187 - -
Apr2g1092 586 MobiDBLite consensus disorder prediction 32 55 - -
Apr2g1092 586 SMART sec14_4 305 472 IPR001251 -
Apr2g1092 586 PRINTS Cellular retinaldehyde-binding protein signature 264 286 - -
Apr2g1092 586 PRINTS Cellular retinaldehyde-binding protein signature 427 446 - -
Apr2g1092 586 SUPERFAMILY Supernatant protein factor (SPF), C-terminal domain 481 579 IPR036598 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr2g1092 Apr-Chr2 17262015 17265267 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr2g1092 265 464 Acyl Lipid Metabolism Gene Families AT1G55840 27.014 4.51e-10 59.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr2g1092 - - gmx:100788197 792.341
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr2g1092 2 17262015 17265267 Apr2g1092 2 17262015 17265267 ECH
Apr2g1092 2 17262015 17265267 Apr1g0378 1 4727293 4730661 PCT