Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g0378 ATGGCTGAGGAAGCTTCAAAAACACCCACAACTCAAGAGGAAGTGGTGGTTACTACCAATGTCGCACTTGCTGATACAACAACAGACACAGGTGTGGCGAAAGACACAGAAGAAGAGGCTTCACCAGAGAAGAAGAAGCTCGTTGAGGAAGAGAAAGCTCCTGAGACCGTGGTATCCAAATCCAGTGGCGATGACAACAACATTCCCGAATCGGGTTCCTTCAAGGAAGAAAGCACAAGAGTTTCTGACCTACCAGACACTGAGAAAAAGGCACTGCAAGAGCTCAAACACCTTATCCAAGAAGCACTCAACAACCACGAGTTAAACCCACCCAAGGAAGAAAAAACACAAGACAACGTTGACAACAAGGAAAAAAGCGTTGAGGAGGGGAAGGAACATGTTTCAGAACATGCTGCTGCTGATGTGGCACCACCACCACCATCAGAGCAAGACCAAACTACAAACAAAGAAGAAGTAGAAGAAGAAGGAGAAGGAAAAAAAAAAGAACCAGTAGCAGAAACACCAGAAGTGAAAAATACTCAGGTGGTTGAAAACAAAGCCGGTGCTTCTACTGTTGATGATGATGGAACAAAAACCGTTGAAGCCATTGAAGAGACCGTTGTGGCTGTTGCTGTGTCTTCTTCACCTTCAGTGGAACCAGAAGGAGCCAAGGTGGAAAAGGAGGAAGCTTCAGTGATGGCATTGGTACCTGAAGAGGTTTCCATTTGGGGGGTGCCACTTCTGGCAGATGAGAGGAGCGATGTGATTCTCTTGAAGTTTCTGCGTGCGAGGGACTTCAAGGTGAAGGAGGCATTCGCCATGATCAAGAACACGATTCGGTGGAGGAAGGAGTTTATGATTGAGGAGTTGTTGGAGGAGAGTTTTGGTGATGATCTTGAGAAGGCGGTGTTCATGCATGGCTTCGATAAGGAAGGACACCCTGTGTGTTATAACATATATGGGGAGTTTCAGAACAAGGAGCTTTATAAGAAGACCTTTTCTGATGAGGAGAAGAGGCACAAGTTCCTCAGGTGGAGAATTCAGTTCCTTGAGAAGAGTATTAGGAAGTTGGATTTCAATCCTGGTGGCATAAGCACCATTGTTCAGGTTAATGATCTCAAGAATTCTCCTGGACCTGGCAAGTGGGAGCTTAGACAAGCAACCAAACAGGCCCTACATTTGCTTCAGGATAACTATCCTGAGTTTGTAGCCAAACAGGTGTTTATCAATGTGCCATGGTGGTACTTGGCAGTGAACAGGATGATAAGCCCTTTTCTTACTCAGAGAACCAAAAGCAAGTTTGTCTTTGCTGGGCCTTCCAAATCAGCTGAGACCCTTCTAAGATACATAGCTGCAGAGCAACTTCCGGTCAAATATGGTGGACTGAGCAAAGATGGGGAGTTCAGAATTTCCGATGCTGTCACTGAAATTACAGTGAGGCCAGCAGCAAAACACACCGTGGAATTTCCAGTTACTGAGAACTGCTTACTTTCTTGGGAGCTCAGAGTAATAGGGTGGGAAGTAAGTTATGGTGCTGAGTTTATACCAAGTTCTGAGGGGAGCTATACTGTGATCATCCAGAAGGCTAGAAAAGTTGCTTCATCAGAAGAACCCGTTCTTTGCAACAACTATAAAATTGGTGAACCTGGTAAAGTGGTTCTCACAATTGAAAATCAAAGCTCTAAGAAGAAGAAGCTCTTGTACCGGTTGAAGGTCAAGCCTTCTTCTGACTGA 1734 0.4521 MAEEASKTPTTQEEVVVTTNVALADTTTDTGVAKDTEEEASPEKKKLVEEEKAPETVVSKSSGDDNNIPESGSFKEESTRVSDLPDTEKKALQELKHLIQEALNNHELNPPKEEKTQDNVDNKEKSVEEGKEHVSEHAAADVAPPPPSEQDQTTNKEEVEEEGEGKKKEPVAETPEVKNTQVVENKAGASTVDDDGTKTVEAIEETVVAVAVSSSPSVEPEGAKVEKEEASVMALVPEEVSIWGVPLLADERSDVILLKFLRARDFKVKEAFAMIKNTIRWRKEFMIEELLEESFGDDLEKAVFMHGFDKEGHPVCYNIYGEFQNKELYKKTFSDEEKRHKFLRWRIQFLEKSIRKLDFNPGGISTIVQVNDLKNSPGPGKWELRQATKQALHLLQDNYPEFVAKQVFINVPWWYLAVNRMISPFLTQRTKSKFVFAGPSKSAETLLRYIAAEQLPVKYGGLSKDGEFRISDAVTEITVRPAAKHTVEFPVTENCLLSWELRVIGWEVSYGAEFIPSSEGSYTVIIQKARKVASSEEPVLCNNYKIGEPGKVVLTIENQSSKKKKLLYRLKVKPSSD* 578
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g0378 577 ProSiteProfiles CRAL-TRIO lipid binding domain profile. 292 467 IPR001251 -
Apr1g0378 577 Coils Coil 89 109 - -
Apr1g0378 577 PANTHER PATELLIN-1 22 576 IPR044834 GO:0008289
Apr1g0378 577 MobiDBLite consensus disorder prediction 1 30 - -
Apr1g0378 577 Gene3D - 223 284 - -
Apr1g0378 577 SUPERFAMILY CRAL/TRIO domain 303 464 IPR036865 -
Apr1g0378 577 Gene3D GOLD domain 477 573 - -
Apr1g0378 577 SUPERFAMILY CRAL/TRIO N-terminal domain 79 293 IPR036273 -
Apr1g0378 577 MobiDBLite consensus disorder prediction 59 75 - -
Apr1g0378 577 SMART CRAL_TRIO_N_2 253 278 IPR011074 -
Apr1g0378 577 MobiDBLite consensus disorder prediction 107 138 - -
Apr1g0378 577 Pfam CRAL/TRIO domain 302 461 IPR001251 -
Apr1g0378 577 CDD SEC14 298 462 IPR001251 -
Apr1g0378 577 Gene3D - 298 476 IPR036865 -
Apr1g0378 577 PRINTS Cellular retinaldehyde-binding protein signature 256 278 - -
Apr1g0378 577 PRINTS Cellular retinaldehyde-binding protein signature 419 438 - -
Apr1g0378 577 SUPERFAMILY Supernatant protein factor (SPF), C-terminal domain 472 574 IPR036598 -
Apr1g0378 577 SMART sec14_4 297 464 IPR001251 -
Apr1g0378 577 Pfam CRAL/TRIO, N-terminal domain 231 277 IPR011074 -
Apr1g0378 577 MobiDBLite consensus disorder prediction 76 96 - -
Apr1g0378 577 MobiDBLite consensus disorder prediction 31 58 - -
Apr1g0378 577 PANTHER PATELLIN-3 PROTEIN 22 576 - -
Apr1g0378 577 MobiDBLite consensus disorder prediction 1 194 - -
Apr1g0378 577 ProSiteProfiles GOLD domain profile. 471 572 IPR009038 -
Apr1g0378 577 MobiDBLite consensus disorder prediction 159 174 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr1g0378 Apr-Chr1 4727293 4730661 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr1g0378 257 456 Acyl Lipid Metabolism Gene Families AT1G55840 27.778 1.27e-09 57.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g0378 - - gmx:100805585 772.311
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr1g0378 1 4727293 4730661 Apr1g0378 1 4727293 4730661 ECH
Apr2g1092 2 17262015 17265267 Apr1g0378 1 4727293 4730661 PCT