LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Apr2g1056	ATGGAAAAATGGGTGGGTTTGGTGATGTTAGTGCTGTCTTTGCAACTGACATTGCCAATGGGAGGTGTTGGTGTTCAAGCTGCGGAGGTCACTTACGATGGAAGGTCTCTTATCATTGATGACCAGAGGAAAATCCTCTTCTCTGGTTCCATTCACTATCCTCGCAGCACCCCTCAGATGTGGGCACCGTTGATAGCAAAAGCCAAAGAAGGAGGGGTGGATGTGATTCAGACCTATGTCTTTTGGAATTTACATGAGCCACGACCCGGACAGTATGATTTCAGCGGGAGATACGACATAGTGAGATTCATAAAGGAAATCGAAGCTCAAGGGCTGTATGTATGCCTCAGGATTGGACCGTATATCGAAAGTGAATGGACATACGGGGGATTCCCTTTTTGGTTGCATGATATCCCTGACATTGTCTTCCGCACTGACAATGAACCATTCAAGTACTACATGCAAAATTTTACAACGAAAATAGTGAGCATGATGCAATCAGAGGGCTTATACGCTTCTCAAGGAGGCCCAATAATATTGTCTCAGATTGAAAATGAATATCAAAACATCCAAAAAGCATTTGGAGAAGCAGCATCCCGGTATGTTGAGTGGGCTGCAGAAATGGCAGTGGGCCTCCGGACTGGCGTGCCGTGGGTTATGTGTAAGCAAACCGACGCTCCTGATCCAGTGATCAATACATGCAATGGAATGAGATGCGGAGAAACTTTCACGGGACCAAACTCCCCCAATAAGCCTGCATTGTGGACAGAGAATTGGACATCATTCTATCAAGTTTATGGTGGTGAGCCATACATCAGATCTGCCGAAGATATTGCATTCCATGTCACTCTTTTTATTGCAAGAAAAAATGGAACCTATGTCAACTACTATATGTACCATGGTGGAACTAACTTTGGGAGAAAGAGCTCTGCTTATGTTATAACATCCTATTATGATCAAGCTCCACTTGATGAATATGGTTTGTTAAGGCAACCCAAGTGGGGTCATCTTAAGGAGTTGCATGCTGCAATCAAGTCTTGTTCTACCACTATATTGCAAGGAATGCAAAGGAGTTTCTCTTTGGGTCAGTTGCAGGACGGGTATATTTTTGAAGAAGAAGGAGGAGAATGTGTTGCTTTCCTTGTAAACAATGATAATGTAAATATGTTTACTGTCCAATTTCAAAACAGATCATACGAATTACCACCAAAGTCAATAAGTATCTTACCTGATTGTCAAACTGTGACTTTCAATACTGCAACTGTAAATACAAAGAGCAACAGAAGAACCATAAATCTAGTACAAACTTTTAGCTCAGCGGATAAATGGAAGCAATTTCAAGATGTGATCCCTATCTTTGACCAGACTTCGTTAATATCAAACTCATTACTTGAGCATATGAACATAACCAAAGACAAATCGGATTACCTTTGGTATACTCTTAGGTTTGAACACAATATACGTTGCAGTGAACCAATGCTTCAGGTTCAGTCTGCTGCTCATGTTGCCCATGCTTTTGCGGATGGCATGTACCTAGGATGGGCACATGGAAGTCACGATGTGAAGTCATTCACCTTACAGGTCCCCATTACGGTAAATGAAGGGACAAATACAAACGATATATCTATATTAAGCGTTATGGTTGGACTCCCGGATTCAGGAGCATTTCTTGAAAGAAGATTTGCTGGATTAACCTCAGTGGAAATCCAGTGCAGTGAAAATTCCTATGATTTGACCAATTCTACGTGGGGATATCAGGTAGGATTACTCGGAGAGCAATTACAAATATACGAAGAAGAAAGTAGCAGTTCTATTCAATGGTTCCAATTAGGGAACACTACTGATCAAAAACTCATTTGGTACAAGAGAACATTTGATTCACCCGAAGGTGATGACCCTGTTGCGTTGAACCTTGAATCCATGGGAAAAGGTGAAGCTTGGGTCAATGGACAAAGCATTGGTCGCTATTGGATCTCATTCCATGATTCCAAAGACCAGCCCTCGCAAACGCTGTATCACGTGCCTCGGTCGTTCCTGAAAGACACTGGAAATGTTTTGGTATTGTTTGAGGAGGGTTATGGGAATCCTCTTGACATCTCCCTCAACACTGTTTCAACCACAAATGTAGAAGAGAGTTTATCCAAGTAA	2148	0.4209	MEKWVGLVMLVLSLQLTLPMGGVGVQAAEVTYDGRSLIIDDQRKILFSGSIHYPRSTPQMWAPLIAKAKEGGVDVIQTYVFWNLHEPRPGQYDFSGRYDIVRFIKEIEAQGLYVCLRIGPYIESEWTYGGFPFWLHDIPDIVFRTDNEPFKYYMQNFTTKIVSMMQSEGLYASQGGPIILSQIENEYQNIQKAFGEAASRYVEWAAEMAVGLRTGVPWVMCKQTDAPDPVINTCNGMRCGETFTGPNSPNKPALWTENWTSFYQVYGGEPYIRSAEDIAFHVTLFIARKNGTYVNYYMYHGGTNFGRKSSAYVITSYYDQAPLDEYGLLRQPKWGHLKELHAAIKSCSTTILQGMQRSFSLGQLQDGYIFEEEGGECVAFLVNNDNVNMFTVQFQNRSYELPPKSISILPDCQTVTFNTATVNTKSNRRTINLVQTFSSADKWKQFQDVIPIFDQTSLISNSLLEHMNITKDKSDYLWYTLRFEHNIRCSEPMLQVQSAAHVAHAFADGMYLGWAHGSHDVKSFTLQVPITVNEGTNTNDISILSVMVGLPDSGAFLERRFAGLTSVEIQCSENSYDLTNSTWGYQVGLLGEQLQIYEEESSSSIQWFQLGNTTDQKLIWYKRTFDSPEGDDPVALNLESMGKGEAWVNGQSIGRYWISFHDSKDQPSQTLYHVPRSFLKDTGNVLVLFEEGYGNPLDISLNTVSTTNVEESLSK*	716

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Apr2g1056	715	Gene3D	Glycosidases	24	348	-	-
	Apr2g1056	715	PRINTS	Glycosyl hydrolase family 35 signature	40	57	IPR001944	GO:0004553\|GO:0005975
	Apr2g1056	715	PRINTS	Glycosyl hydrolase family 35 signature	61	79	IPR001944	GO:0004553\|GO:0005975
	Apr2g1056	715	PRINTS	Glycosyl hydrolase family 35 signature	116	135	IPR001944	GO:0004553\|GO:0005975
	Apr2g1056	715	PRINTS	Glycosyl hydrolase family 35 signature	173	188	IPR001944	GO:0004553\|GO:0005975
	Apr2g1056	715	PRINTS	Glycosyl hydrolase family 35 signature	254	269	IPR001944	GO:0004553\|GO:0005975
	Apr2g1056	715	PRINTS	Glycosyl hydrolase family 35 signature	292	307	IPR001944	GO:0004553\|GO:0005975
	Apr2g1056	715	PRINTS	Glycosyl hydrolase family 35 signature	311	327	IPR001944	GO:0004553\|GO:0005975
	Apr2g1056	715	PRINTS	Glycosyl hydrolase family 35 signature	616	630	IPR001944	GO:0004553\|GO:0005975
	Apr2g1056	715	PRINTS	Glycosyl hydrolase family 35 signature	643	659	IPR001944	GO:0004553\|GO:0005975
	Apr2g1056	715	Pfam	Beta-sandwich domain in beta galactosidase	352	422	IPR041392	-
	Apr2g1056	715	Gene3D	-	582	712	-	-
	Apr2g1056	715	PANTHER	BETA-GALACTOSIDASE 6	28	714	-	-
	Apr2g1056	715	ProSitePatterns	Glycosyl hydrolases family 35 putative active site.	175	187	IPR019801	GO:0004553\|GO:0005975
	Apr2g1056	715	SUPERFAMILY	Galactose-binding domain-like	582	710	IPR008979	-
	Apr2g1056	715	Pfam	Glycosyl hydrolases family 35	36	343	IPR031330	-
	Apr2g1056	715	SUPERFAMILY	Galactose-binding domain-like	406	564	IPR008979	-
	Apr2g1056	715	SUPERFAMILY	(Trans)glycosidases	29	347	IPR017853	-
	Apr2g1056	715	PANTHER	BETA-GALACTOSIDASE RELATED	28	714	IPR001944	GO:0004553\|GO:0005975

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Apr2g1056	Apr-Chr2	16914095	16920441	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Apr2g1056	1	707	Glycoside Hydrolase	AT5G63800	61.831	0.0	937

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Apr2g1056	-		-	gmx:100782510	1225.69

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Apr2g1056	2	16914095	16920441	Apr2g1056	2	16914095	16920441	ECH
	Apr2g1056	2	16914095	16920441	Apr1g0406	1	5056787	5079820	ECH