Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g0406 ATGGAAAAGTGGGTGGTGCCTTTGGTGATGCTGTTGGTGTCGTTCAGAATAATGGAAGGTTTTGGCGTAAAAGCTGAGGTCACATACGATGGAAGATCTCTTATCATTCATGGCCAGAGAAAAATTCTCTTCTCGGGTTCTATTCATTATCCTCGCAGCACTCCGCAGATGTGGCCAGATTTGATAGCAAAAGCAAAACAAGGAGGATTGGACGTGATTCAGACCTATGTGTTTTGGAATCTACACGAGCCTCAACCTGGAGAGTATGATTTCAGCGGCAGATATGACTTAGTGAGATTCATAAAGGAAATCCAAGCTCAAGGACTCTATGTATGCCTCAGAATTGGACCTTTCATCGAAAGTGAATGGACATATGGTGGATTTCCATTTTGGTTGCATGATGTTCCTGGCATTGTCTACCGAACTGATAATGAGCCATTCAAGTTCTACATGCAAAATTTCACGACAAAAATTGTGAATATGATGAAAGCAGAGGGCTTATATGCTTCGCAAGGAGGCCCAATTATACTGTCACAGATTGAGAATGAATATCAAAATATCCAAAAGCCATTTGGAACAGCAGGATCGCGGTATGTCCAATGGGCTGCAAAAATGGCAGTGGGCCTTCAGACTGGTGTGCCATGGATAATGTGCAAGCAAACTGACGCTCCTGATCCTGTGATCAATACATGCAACGGCATGAAGTGCGGAGAAACTTTTACGGGACCAAATTCCCCCAATAAGCCTGCCTTGTGGACTGAAAATTGGACATCGTTCTATCAAGTGTACGGTGGATTGCCATACATAAGGTCTGCCGAAGATATTGCATTCCATGTCACTCTTTTTATTGCAAGAAATGGAAGCTATGTCAACTATTATATGTATCATGGTGGAACCAACTTTGGAAGAACGAGCTCTGCTTATGTTATAACAGCCTATTATGATCAAGCCCCACTTGATGAATATGGTTTACTCAGGCAACCCAAGTGGGGACATCTCAAGCAGTTACATGATGTAATAAAGTCTTGCTCTGCCACTTTATTACAAGGAGCACAGAGGAACTTCTCTTTAGGTCAACTACAAGAGGCTTATGTTTTTGAAGAAGGAAAAGAAGAATGTGTTGCGTTCCTTATAAACAATGATAAAGAGAATAAGATTACTGTCCAATTCCGCAACAGATCATATGAATTGCTCCCTAAGTCAATAAGTATCTTACCAGATTGTCAAAATGTGACTTTCAATACCGCAAATGTAAATACAACAAGCAACACAAGGATCATTAGTTCGAAACAAAACTTCAGCTCAGTGAATGATTGGAAACAATTCCAAGATGTCATTCCAAACTTTGATGACACCTCACTAAGATCAAACTCATTACTTGAGCAAATGAATACAACTAAAGACAAATCGGATTACCTTTGGTATACTCTTAGGTTTGAATATAATTTATCTTGCACCAAACCAACACTTGGTGTTGAGTCTGCTGCTCATGTTGCCCATGCTTTTATGAACAACACATACATAGGTGCGGTACATGGAAATCATGATGTAAAGTCATTCAGATTAGAGTTCCCTGTTACAGTAAATGAAGGAATAAACAACCTTTCTATACTCAGCGTTATGGTTGGACTACCGGACTCGGGGGCATTTCTTGAAAGAAGATTTTCTGGTTTAATCAGCGTAGAACTTCAATGCAGTGAAGAAGAGTCTCTTAATTTTACCAATTCTACATGGGGATATCAGGTTGGATTACTGGGGGAGCAATTAGAAGTATATAAAGAAGAAAACAGCAGTGATATTGAATGGAGTCAACTAGGAAATATTGATGAACAAACACTCATTTGGTACAAGACTACATTTGACACACCAGAGGGAGATGACCCTGTTGCTTTGGACCTTAGCTCAATGGGAAAAGGTGAAGCTTGGGTAAATGGACAAAGCATTGGTCGCTATTGGATCTTGTTTCATGATTCCAAAGGCAACCCTTCGCAATCACTGTATCATGTGCCTCGGTCTTTCCTTAATGAATCTGGAAACGTTTTGGTTTTGCTGGAGGAAGGTGGTGGGAACCCTCTTCATGTTTCCTTGGTTACTGTTTCAGTCACAAATTTACATGAAAATTTTTCTAAATTATCATTGCCCTCTCCTTCTTAG 2154 0.4025 MEKWVVPLVMLLVSFRIMEGFGVKAEVTYDGRSLIIHGQRKILFSGSIHYPRSTPQMWPDLIAKAKQGGLDVIQTYVFWNLHEPQPGEYDFSGRYDLVRFIKEIQAQGLYVCLRIGPFIESEWTYGGFPFWLHDVPGIVYRTDNEPFKFYMQNFTTKIVNMMKAEGLYASQGGPIILSQIENEYQNIQKPFGTAGSRYVQWAAKMAVGLQTGVPWIMCKQTDAPDPVINTCNGMKCGETFTGPNSPNKPALWTENWTSFYQVYGGLPYIRSAEDIAFHVTLFIARNGSYVNYYMYHGGTNFGRTSSAYVITAYYDQAPLDEYGLLRQPKWGHLKQLHDVIKSCSATLLQGAQRNFSLGQLQEAYVFEEGKEECVAFLINNDKENKITVQFRNRSYELLPKSISILPDCQNVTFNTANVNTTSNTRIISSKQNFSSVNDWKQFQDVIPNFDDTSLRSNSLLEQMNTTKDKSDYLWYTLRFEYNLSCTKPTLGVESAAHVAHAFMNNTYIGAVHGNHDVKSFRLEFPVTVNEGINNLSILSVMVGLPDSGAFLERRFSGLISVELQCSEEESLNFTNSTWGYQVGLLGEQLEVYKEENSSDIEWSQLGNIDEQTLIWYKTTFDTPEGDDPVALDLSSMGKGEAWVNGQSIGRYWILFHDSKGNPSQSLYHVPRSFLNESGNVLVLLEEGGGNPLHVSLVTVSVTNLHENFSKLSLPSPS* 718
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g0406 717 Gene3D - 578 708 - -
Apr1g0406 717 Pfam Beta-galactosidase jelly roll domain 609 683 IPR025300 -
Apr1g0406 717 ProSitePatterns Glycosyl hydrolases family 35 putative active site. 172 184 IPR019801 GO:0004553|GO:0005975
Apr1g0406 717 PANTHER BETA-GALACTOSIDASE RELATED 23 711 IPR001944 GO:0004553|GO:0005975
Apr1g0406 717 PRINTS Glycosyl hydrolase family 35 signature 37 54 IPR001944 GO:0004553|GO:0005975
Apr1g0406 717 PRINTS Glycosyl hydrolase family 35 signature 58 76 IPR001944 GO:0004553|GO:0005975
Apr1g0406 717 PRINTS Glycosyl hydrolase family 35 signature 113 132 IPR001944 GO:0004553|GO:0005975
Apr1g0406 717 PRINTS Glycosyl hydrolase family 35 signature 170 185 IPR001944 GO:0004553|GO:0005975
Apr1g0406 717 PRINTS Glycosyl hydrolase family 35 signature 251 266 IPR001944 GO:0004553|GO:0005975
Apr1g0406 717 PRINTS Glycosyl hydrolase family 35 signature 288 303 IPR001944 GO:0004553|GO:0005975
Apr1g0406 717 PRINTS Glycosyl hydrolase family 35 signature 307 323 IPR001944 GO:0004553|GO:0005975
Apr1g0406 717 PRINTS Glycosyl hydrolase family 35 signature 611 625 IPR001944 GO:0004553|GO:0005975
Apr1g0406 717 PRINTS Glycosyl hydrolase family 35 signature 638 654 IPR001944 GO:0004553|GO:0005975
Apr1g0406 717 SUPERFAMILY (Trans)glycosidases 26 343 IPR017853 -
Apr1g0406 717 Pfam Glycosyl hydrolases family 35 33 338 IPR031330 -
Apr1g0406 717 Gene3D Glycosidases 23 344 - -
Apr1g0406 717 Pfam Beta-sandwich domain in beta galactosidase 347 418 IPR041392 -
Apr1g0406 717 PANTHER BETA-GALACTOSIDASE 6 23 711 - -
Apr1g0406 717 SUPERFAMILY Galactose-binding domain-like 577 706 IPR008979 -
Apr1g0406 717 SUPERFAMILY Galactose-binding domain-like 402 558 IPR008979 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr1g0406 Apr-Chr1 5056787 5079820 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr1g0406 1 702 Glycoside Hydrolase AT5G63800 62.942 0.0 957
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g0406 - - gmx:100818637 1311.59
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr1g0406 1 5056787 5079820 Apr1g0406 1 5056787 5079820 ECH
Apr2g1056 2 16914095 16920441 Apr1g0406 1 5056787 5079820 ECH