Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr2g1007 ATGCTGAGCTCTGGGGATGGAGATATTGATATATTCTTTGATTCAGTGGATAGTTTGCCAACTCAAGATTCCGTTTTAGCCATTGGTTCTGAAAGGTGTGATTATGATTATGATGAAATTTGGGTGAAAGAGCCTATTAGTGTGAAGGAAAGGAGGGAACGTTTTCTGCATGGTATGGGTTTAGCTGATGCTTCTTCCAAGGTTTGTTCACAAGAGCGAAAAATAAGCTTCGATGACTCATCCATCAACTTAGGATTGGATAGGATCACGGAATGCAGTGGAGCAATCTCAAATGCTTGCAGTTTTTCTGCTGATCAAGTATCTGAGAAGTTGGTTCTCTCTGGATGCAAAACAGCTTCTGAAGCAAAAGTCTTGTTGGATGAACAAAAAGGGTGTCCTCAAGATGAATCACATGAAAGTTTTCAAGGGAAAGTGCATGAGCTCTCTTCTACAGCCCAGGAGCACAGACACACAGAAGCTGAGGCCCAAGAAGAGTTTCAGGATTTAATGAGTAAAAAGAGAAGGAAAAACTGGTGGAAGCGCTTTACTAACCTCAAGAAAGGTGGTGATGGAAAAGTCAGATCAAAATTGGATACAGGGACGAATAAAACTCGTAGAATAAAGGTAAGGCAGAATAAAAAGAGGTGGCTGGAGTTCAGTGGGCTACACATTGGACAAGAGGTTAGAGCTCATAAAGGCTTAATCTGGACCATGAAATTTAGTCCCAATGGTCAGTATTTAGCAAGTGGAGGTGAAGATGGTGTTGTGCGCATATGGCGTGTTGTATCATTAGATACATCCAATATTTGTTTCACCACAGAAGACAGTACCACTTGTAGCAAAGTGAAACATGAAAACTCTTCTCGTTGGAAAAAACACTCAAGCCAACCCATCATTTTCCTTCCAAATAGTATTTTTCAAATTGAGGAATCACCACTGCAAGAATTCTTTGGCCATTCCAGTGATGTCTTGGATCTGGCTTGGTCTAATTCAGATATTCTCCTTTCATCTTCTATGGATAAGACTGTTCGCTTGTGGCAAATTGGTTGTGATCAATGTCTAAAAGTTTTCCATCACAATGATTATGTGACATGCATTCAATTCAATCCTGTCGATGAAAACTACTTCATTAGTGGGTCCATTGATGGTAAGGTTCGAATATGGGGGATACAAGAAGAGCGAGTTATTGACTGGGCAGATATACGAGATGTCATAAGTGCTATAAGTTACCAGCAAGATGGGCAAGGATTTGTAGTTGGTTCTGTTACAGGCACTTGTCGGTTTTATGTTGCTTCAGGAAAATATTTCCAGCTTGAGGCGCAGATAAATGTCCATGAAAAGAAGAAAGCATTGGGCAACAAGATTACTGGCATTCAGTTCTCGCAAAAAAACTCTCAGAGAATTATGATCACCTCAGAAGATTCCAAAATTCATATATTTGATGGCATTGAGCTTGTTCAGAAATACAGAGGTCTTCCTAAGTCAGGAAGTCAAATGTCTGGTTCATTTACACCAAACGAAAAACATATAATTTCAGTTGGAGAGGACTCCCATGTGTATATTTGGAACTTCAATGAGTTGGAAAATGCTTCTTCTAAACAGAGAAAATCCAAACGAGCCTGTGAGTACTTTTCATCCAAGGGTGTTACTGTTGCAATACCTTGGTCAGGCATGAAAGCAGATCAAAGGGGCTCTAGCAGTAACTTTTCCCACCGGTCTTCAGACATGCAAACGCAACTAGATGTTAGAGATTCAGAACGTTTTTCTCTCAGTAATTGGTTCTCCATTGATGCTACATGTCGAGGTTCTATGACATGGCCTGAGGAGAAACTACCAAGCTGGGATTTACCTTTAGCAGAAGATGATGAGTATGATCACCAACAGTTATATCACCAAGATACTTGCCATGACAGAAGTGTTTTAGAAACATGGGGACTACCAATTGTGGCAGCTGGTTGTGATGGAACTATCAAGACATTCCACAACTTTGGATTGCCCATTAGGCTTTAG 2010 0.4045 MLSSGDGDIDIFFDSVDSLPTQDSVLAIGSERCDYDYDEIWVKEPISVKERRERFLHGMGLADASSKVCSQERKISFDDSSINLGLDRITECSGAISNACSFSADQVSEKLVLSGCKTASEAKVLLDEQKGCPQDESHESFQGKVHELSSTAQEHRHTEAEAQEEFQDLMSKKRRKNWWKRFTNLKKGGDGKVRSKLDTGTNKTRRIKVRQNKKRWLEFSGLHIGQEVRAHKGLIWTMKFSPNGQYLASGGEDGVVRIWRVVSLDTSNICFTTEDSTTCSKVKHENSSRWKKHSSQPIIFLPNSIFQIEESPLQEFFGHSSDVLDLAWSNSDILLSSSMDKTVRLWQIGCDQCLKVFHHNDYVTCIQFNPVDENYFISGSIDGKVRIWGIQEERVIDWADIRDVISAISYQQDGQGFVVGSVTGTCRFYVASGKYFQLEAQINVHEKKKALGNKITGIQFSQKNSQRIMITSEDSKIHIFDGIELVQKYRGLPKSGSQMSGSFTPNEKHIISVGEDSHVYIWNFNELENASSKQRKSKRACEYFSSKGVTVAIPWSGMKADQRGSSSNFSHRSSDMQTQLDVRDSERFSLSNWFSIDATCRGSMTWPEEKLPSWDLPLAEDDEYDHQQLYHQDTCHDRSVLETWGLPIVAAGCDGTIKTFHNFGLPIRL* 670
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr2g1007 669 Gene3D - 218 556 IPR015943 GO:0005515
Apr2g1007 669 SUPERFAMILY WD40 repeat-like 223 659 IPR036322 GO:0005515
Apr2g1007 669 SMART WD40_4 309 347 IPR001680 GO:0005515
Apr2g1007 669 SMART WD40_4 221 260 IPR001680 GO:0005515
Apr2g1007 669 SMART WD40_4 482 523 IPR001680 GO:0005515
Apr2g1007 669 SMART WD40_4 391 430 IPR001680 GO:0005515
Apr2g1007 669 SMART WD40_4 350 389 IPR001680 GO:0005515
Apr2g1007 669 SMART WD40_4 435 481 IPR001680 GO:0005515
Apr2g1007 669 PRINTS G protein beta WD-40 repeat signature 247 261 IPR020472 -
Apr2g1007 669 PRINTS G protein beta WD-40 repeat signature 334 348 IPR020472 -
Apr2g1007 669 PRINTS G protein beta WD-40 repeat signature 376 390 IPR020472 -
Apr2g1007 669 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 316 348 - -
Apr2g1007 669 PANTHER WD REPEAT DOMAIN 44 1 669 IPR040324 -
Apr2g1007 669 ProSiteProfiles Trp-Asp (WD) repeats profile. 356 398 IPR001680 GO:0005515
Apr2g1007 669 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 228 261 - -
Apr2g1007 669 ProSiteProfiles Trp-Asp (WD) repeats profile. 502 532 IPR001680 GO:0005515
Apr2g1007 669 ProSiteProfiles Trp-Asp (WD) repeats profile. 316 356 IPR001680 GO:0005515
Apr2g1007 669 MobiDBLite consensus disorder prediction 133 158 - -
Apr2g1007 669 Coils Coil 152 172 - -
Apr2g1007 669 ProSiteProfiles Trp-Asp (WD) repeats profile. 228 269 IPR001680 GO:0005515
Apr2g1007 669 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 356 391 - -
Apr2g1007 669 PANTHER TRANSCRIPTION FACTOR WD40-LIKE FAMILY-RELATED 1 669 - -
Apr2g1007 669 Pfam WD domain, G-beta repeat 227 259 IPR001680 GO:0005515
Apr2g1007 669 Pfam WD domain, G-beta repeat 352 388 IPR001680 GO:0005515
Apr2g1007 669 Pfam WD domain, G-beta repeat 311 346 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr2g1007 Apr-Chr2 16376364 16380825 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr2g1007 302 522 Miscellaneous Gene Families AT5G08390 22.318 7.92e-06 47.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr2g1007 K20241 - gmx:100819135 1076.62
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr2g1007 2 16376364 16380825 Apr1g0474 1 5822611 5827206 PCT