Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g0474 ATGCTGATCTCTGATGAAGGAGATAATGATGTGTTTTTTGACTCGTTGGATTGCTTGTCACCAACCCAAGAGTCTTTTTTGACAGAACAAGAGTTTGGCTATGAGATTTGGGTGAATGAGCCTCTCAGTGTGAAGGAAAGGAGGGAAAGATTTTTGCTGGGTATGGGACTGGCTTGTGCTTCTTGTTCTGATGTTCGTTCTCAAGAGAAGATGATGAGTTGTGATGCCTCATCAGTGAGTTTGGGACTAGAGAGGATCAGAGATTGCAGTGGAGCTATCTCAAATGATTGTACAACTTCGGAAGCACAAGTCTTGTTTGATGAATCGAAAGGGTGCTTTGATGATAAACCAGAAGGGAAGGTTTATGAGGTTTCTTGTACAGATCAAGAGCTCAGACATGGATCAGCTGAGGCTCTAGAAGAATTTCAACATTTTGATATGGGTAAAAAGGAAAAGAAAAGCTGGTGGAAGCACTTTATAAACAACAGGAAAGGAGACGGAAGGAAAATCAGATCAAAATTCAATTCAGGGAAGAATAAAACTTGCAGAGTAAATGTAAGGCTGAATAAGAAGAGTTGGATGGAGTTCAGTGCACTGTATATTGGACAAGAGATTAGAGCGCACAAAGGCCTAATTTGGACTATGAAATTCAGTCCCAATGGCCATTATCTAGCTAGTGGAGGTGAAGATGGTGTTATACGCATATGGCGTGTGACATCACTGAGTACATCTAGTATTAGCTTCACTGCAGAAGACAGTGCTGTTAGCAGAGCGAAACATGACATCTCTTGTTCTCGGAAGAAACCCTCGAGTCAATCCTTCATTGCTCTTCCAAATAAGATTTCCAACATTGAGGAATCGCCCTTGCAAGAATTTTATGGTCACTCCAGTGATGTCTTGGATTTGGCTTGGTCTAATTCAGATACTCTCCTTTCGTCTTCTATGGATAAAACTGTTCGCTTGTGGAAAATTGGTTGCAATCAATGTCTAAGAGTTTTCCATCACAAAGACTACGTCACTTGTATTCAGTTCAACCCCATTGACGAAAATTACTTCATCAGTGGCTCCATAGATGGTAAAGTCCGAATATGGGGAATACATGAAGAGCGAGTTGTTGACTGGGCATACGTACGAGATGTGATAAGTGCTATAAGATACCAACCAGATGGAAAAGGGTTTGTTGTTGGTTCCCTCACTGGCACTTGCCGATTTTATGTTGCCTCAGGCAAACATTTCCAGCTTGAGGCGCAGATTCGTGTCAATGGAAAGAAGAGAACGTCTGGCAACAAGATTACTGGCATTCAGTTTTCCCAGAATAACCACCGAAGAGTTATGATTACATCAGAAGACTCCAAAGTTAGAATTTTGGAAGGCAATGAACTTGTTCAAACATTTAAAGGCCTTCCAAAGTCCGGAAGTCAGATGTCTGGTTCATTTACTTCATGTGGAAAACATATAATTTCAGTTGGAGAGGACTCTCGCGTTTATATTTGGAACTTCAATGACTTGGGAAGTGCTTCTTCCAAACAAACGAAGTCCAAGTATTCTTGTGAGTACTTTTGCTCTGAGGGGGTTACTGTTGCAATGCCTTGGTCTGGCATGAGTGCAGAACAAAGGAGCTCTGGCAATGATTTTGCTCATTGTTCTTCAGAAATGCAACACCAATTAGAGGGTGCTCATGGGCTTAGGGAGTCGGAACGGTTTTCTTTCGGTAGTTGGTTCTCCATTGATGGCACATGCCGAGGTTCTATGACGTGGCCTGAGGAGAAGCTTCCAAGCTGGGATTTACCTCTTGCAGAAGTTGAATTTGATCACCATCAACTATGTAACAAAGATCCTTGTCATGACAAATGTGTATCAGAAACATGGGGACTATCAATTGTGACTGCTGGTTGTGATGGAACCATCAAGACATTCCACAACTTTGGATTGCCCATTAGGCTTTAG 1947 0.4196 MLISDEGDNDVFFDSLDCLSPTQESFLTEQEFGYEIWVNEPLSVKERRERFLLGMGLACASCSDVRSQEKMMSCDASSVSLGLERIRDCSGAISNDCTTSEAQVLFDESKGCFDDKPEGKVYEVSCTDQELRHGSAEALEEFQHFDMGKKEKKSWWKHFINNRKGDGRKIRSKFNSGKNKTCRVNVRLNKKSWMEFSALYIGQEIRAHKGLIWTMKFSPNGHYLASGGEDGVIRIWRVTSLSTSSISFTAEDSAVSRAKHDISCSRKKPSSQSFIALPNKISNIEESPLQEFYGHSSDVLDLAWSNSDTLLSSSMDKTVRLWKIGCNQCLRVFHHKDYVTCIQFNPIDENYFISGSIDGKVRIWGIHEERVVDWAYVRDVISAIRYQPDGKGFVVGSLTGTCRFYVASGKHFQLEAQIRVNGKKRTSGNKITGIQFSQNNHRRVMITSEDSKVRILEGNELVQTFKGLPKSGSQMSGSFTSCGKHIISVGEDSRVYIWNFNDLGSASSKQTKSKYSCEYFCSEGVTVAMPWSGMSAEQRSSGNDFAHCSSEMQHQLEGAHGLRESERFSFGSWFSIDGTCRGSMTWPEEKLPSWDLPLAEVEFDHHQLCNKDPCHDKCVSETWGLSIVTAGCDGTIKTFHNFGLPIRL* 649
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g0474 648 PRINTS G protein beta WD-40 repeat signature 224 238 IPR020472 -
Apr1g0474 648 PRINTS G protein beta WD-40 repeat signature 310 324 IPR020472 -
Apr1g0474 648 PRINTS G protein beta WD-40 repeat signature 352 366 IPR020472 -
Apr1g0474 648 Gene3D - 331 536 IPR015943 GO:0005515
Apr1g0474 648 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 332 364 - -
Apr1g0474 648 PANTHER TRANSCRIPTION FACTOR WD40-LIKE FAMILY-RELATED 1 648 - -
Apr1g0474 648 SUPERFAMILY WD40 repeat-like 201 638 IPR036322 GO:0005515
Apr1g0474 648 ProSiteProfiles Trp-Asp (WD) repeats profile. 292 332 IPR001680 GO:0005515
Apr1g0474 648 ProSiteProfiles Trp-Asp (WD) repeats profile. 205 246 IPR001680 GO:0005515
Apr1g0474 648 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 292 324 - -
Apr1g0474 648 Gene3D - 120 330 IPR015943 GO:0005515
Apr1g0474 648 PANTHER WD REPEAT DOMAIN 44 1 648 IPR040324 -
Apr1g0474 648 Pfam WD domain, G-beta repeat 328 364 IPR001680 GO:0005515
Apr1g0474 648 Pfam WD domain, G-beta repeat 204 236 IPR001680 GO:0005515
Apr1g0474 648 Pfam WD domain, G-beta repeat 287 323 IPR001680 GO:0005515
Apr1g0474 648 ProSiteProfiles Trp-Asp (WD) repeats profile. 332 374 IPR001680 GO:0005515
Apr1g0474 648 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 205 240 - -
Apr1g0474 648 SMART WD40_4 285 323 IPR001680 GO:0005515
Apr1g0474 648 SMART WD40_4 367 406 IPR001680 GO:0005515
Apr1g0474 648 SMART WD40_4 458 499 IPR001680 GO:0005515
Apr1g0474 648 SMART WD40_4 198 237 IPR001680 GO:0005515
Apr1g0474 648 SMART WD40_4 326 365 IPR001680 GO:0005515
Apr1g0474 648 SMART WD40_4 411 457 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr1g0474 Apr-Chr1 5822611 5827206 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr1g0474 194 498 Miscellaneous Gene Families AT5G08390 21.136 5.62e-08 54.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g0474 K20241 - gmx:100780979 1033.09
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr1g0474 1 5822611 5827206 Apr1g0474 1 5822611 5827206 ECH
Apr2g1007 2 16376364 16380825 Apr1g0474 1 5822611 5827206 PCT