Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g2401 ATGCTGGAGCTATTTCAAAATGATGGAAGTCCATCTACAAGGTTTCATCCTTTGGAATCCTACCGTGTCCCAAAGCCGCAACGTGAAACACGCACTCATCTCATCTTCACTTCGATCACCTGTCTCCCACCGTCACAAGATCTGAGTCTGAAAGCAATTCCATCATTTTCCCTCACTTTCTCACCTTCCAAACACCACCGCCATCCGAAATTCAGAACCCGACTCTCCATCAGAATGTCCTCAACACAAGGCGTGGTGGAGCACATCGTCCTCGTCAAGGTGAAAGACGACACGGAACCCTCCAAGGTCAACGCAATGCTCAACGCGCTTAACTCCCTCGCGAACCTTGACTGCGTCCTCCACTTAACGGTGGGCCCACTACTCCATAATGGAGCCAACACAACAACGTCGGATCTCCGTTTCACACACATGCTCCACAGCCGTTACAACTCCAAGGAGGATCTACAAGCCTACAACGCGAATCCTAACCACATTGGCACTGCAAGGGAGTTCCTCTTACCCATCATCGACGATCTCATGGTCGTCGATTGGGTCGCCGGTGATCCATCCCTTCCGCCGCCGGCGACAGGTTCGGCCCTCCGCATCAGTTTCTTGAAAGTGAGAGAAAGAGACGAGGTTAAGGACGAGGTTTTGGGTGCAGTACGAGGAATGAAGGACAGTGTGAGAGGAATTGGGCAATTCTCTTGCGGGGAAAACATCACGCCGGAGAGAGCGAAGGGTTTTTCGATAGCTTCGCTTGCGATTTTTCCGGGAAAGAGGGAATTGGAGGGTGTGGATTGGAACGAAGGGTTGGTTAACAAGGTTAAGGAGCACGTGGAGAGTATGGTGGTGATTGATTATGTGGTGCCATAA 873 0.512 MLELFQNDGSPSTRFHPLESYRVPKPQRETRTHLIFTSITCLPPSQDLSLKAIPSFSLTFSPSKHHRHPKFRTRLSIRMSSTQGVVEHIVLVKVKDDTEPSKVNAMLNALNSLANLDCVLHLTVGPLLHNGANTTTSDLRFTHMLHSRYNSKEDLQAYNANPNHIGTAREFLLPIIDDLMVVDWVAGDPSLPPPATGSALRISFLKVRERDEVKDEVLGAVRGMKDSVRGIGQFSCGENITPERAKGFSIASLAIFPGKRELEGVDWNEGLVNKVKEHVESMVVIDYVVP* 291
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g2401 290 Pfam Stress responsive A/B Barrel Domain 86 185 IPR013097 -
Apr1g2401 290 Pfam Stress responsive A/B Barrel Domain 204 289 IPR013097 -
Apr1g2401 290 PANTHER STRESS-RESPONSE A/B BARREL DOMAIN-CONTAINING PROTEIN UP3 71 290 - -
Apr1g2401 290 ProSiteProfiles Stress-response A/B barrel domain profile. 199 290 IPR013097 -
Apr1g2401 290 SUPERFAMILY Dimeric alpha+beta barrel 202 289 IPR011008 -
Apr1g2401 290 SUPERFAMILY Dimeric alpha+beta barrel 83 187 IPR011008 -
Apr1g2401 290 Gene3D - 196 289 - -
Apr1g2401 290 Gene3D - 77 186 - -
Apr1g2401 290 ProSiteProfiles Stress-response A/B barrel domain profile. 86 184 IPR013097 -
Apr1g2401 290 PANTHER - 71 290 IPR044662 -
Apr1g2401 290 SMART Dabb_2 199 289 IPR013097 -
Apr1g2401 290 SMART Dabb_2 86 186 IPR013097 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr1g2401 Apr-Chr1 33630576 33632763 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g2401 - - aprc:113852330 573.933
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr1g2401 1 33630576 33632763 Apr1g2401 1 33630576 33632763 ECH
Apr9g2474 9 32081207 32083551 Apr1g2401 1 33630576 33632763 PCT