Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g2354 ATGATTATGGAGAATCTAGTTAGAAAGAGGTTTCATGGGGTGGTGTTAATGCTGTTGTGTTTGTGCGTTTGTAGTGTCACAGCCTCTGTGACTTATGACCACAGAGCAATTGTTGTTGATGGAAATAGAAGAATTTTGATCTCTGGCTCCATCCATTATCCAAGAAGCACACCTCAAATGTGGCCTGACCTCATTCAGAAGGCCAAAGATGGAGGCCTTGACGTTATTCAGACCTATGTGTTTTGGAATGGTCATGAACCTTCTCCTGGACAATATTATTTCGAGGATAGGTTTGATCTGGTAAAGTTCGTTAAGCTGGTACAGCAAGCTGGCCTTTATGTTCATCTCCGTATTGGTCCCTACATATGTGCTGAATGGAACTTTGGAGGATTTCCTGTTTGGCTTAAGTATGTTCCGGGTATTGCTTTCAGAACAGACAATGAGCCATTCAAGGCGGCAATGCAAAAATTCACTGCAAAGATTGTCAGCTTGATGAAATCAGAGGAGTTGTTTCAAAGCCAGGGTGGTCCAATAATTATGTCACAGATAGAGAATGAGTTTGGACCAGTGGAACGGCAAATTGGTGCTCCTGGAAAAGCTTATACGAATTGGGCTGCTCAAATGGCCGTAGGTCTAGATACTGATGCTCCCTGGGTTATGTGCAAGCAAGAAGATGCTCCTGATCCTGTTATTGACACCTGCAATGGATTCTACTGTGAAAACTATAAGCCCAACAAGAAGTACAAACCCAAAATTTGGACTGAGAATTGGACTGGCTGGTACACTGATTTTGGTAGTGCAAACCCTCGTAGACCAGCAGAAGACTTGGCATTCTCAGTTGCAAGATTCATACAGAATGGTGGTGCATTTGTTAACTACTATATGTACCATGGAGGAACTAATTTTGGTCGGACGTCTAGTGGCCTCTTCATTACAACAAGCTATGACTATGATTCTCCCCTTGATGAATACGGACTTCCAAATGAACCAAAATGGGGGCATCTGAGAGATTTGCATAAAGCAATTAAACAATGTGAGCCGGCTTTAGTGGCTACAGATCCCACATTGATATCACTTGGATATAACCTTGAGGCACATGTGTTCAATACCTCCGATGCTTGTTCTGCATTCCTTGCAAATTATGACACAAAATCTTCCGCAAAAGCTACATTTGGAAATGGGCAATATGACCTACCACCTTGGTCTATCAGTATTCTTCCTGACTGCGAAACTGAAGTTTTCAACACTGCAAAGGTTGGTTCCCATAGCTGGCTGAAAAAGATGACTCAAGTACACAGCGCATTTACTTGGCAGTCATACAATGAAGAACCTGCCTCATCCAGTGAAGGTGATTCAATCACAGCCGATGCACTTTGGGAGCAGGTCAATGTGACCCGCGATTCTACAGATTATTTGTGGTATATGACAGATGTCAACATTAATCCTGATGAAGGATTTTTAAAGAATGGGGAATCTCCCGTTCTTACTGTAATGTCAGCAGGCCATGTTCTTCATGTTTTCATTAATGGTCAACTTTCAGGAACTGTGTATGGGGGATTGGGGAATCCTAAATTAACATTTAGTGACGGTGTGAAGCTGACAGCTGGCAATAACAAGCTTTCTTTACTTAGTGTTACCGTTGGTCTCCCGAATGTTGGTTTGCACTTTGAAACATGGAATGCTGGGGTGTTGGGCCCAGTCACACTGAAGGGTCTAAATGAGGGAACACGGGACTTGTCTCAGCAGAAATGGTCTTACAAGGTTGGGCTGAAAGGTGAAGCCTTGAGCCTTCACACTCTAAGTGGGAGTGATTCTGTAGAATGGGCAGGAGGATCATCAGTGGCTAAAAACCAACCTTTGACATGGTACAAGGCAACTTTTAGCGCACCAGCTAGCAATGATCCATTGGCTCTTGATATGAGTAGCATGGGAAAGGGTGAAGTATGGATAAATGGTCAGAGCATTGGTCGCCATTGGCCAGCATATATAGCGCATGGCAATTGTAATAATTGTAATTATGCTGGATTTTACACTGATAACAAATGCCGTATAAATTGTGGACAACCCTCCCAAAGATGGTACCATGTTCCTAGCTCATGGCTGAACCCAAGTGGTAACTTCTTGGTTGTGTTTGAGGAATGGGGAGGTGACCCTAGTGGAATTACTTTGGTGAAAAGAACTTAA 2184 0.4313 MIMENLVRKRFHGVVLMLLCLCVCSVTASVTYDHRAIVVDGNRRILISGSIHYPRSTPQMWPDLIQKAKDGGLDVIQTYVFWNGHEPSPGQYYFEDRFDLVKFVKLVQQAGLYVHLRIGPYICAEWNFGGFPVWLKYVPGIAFRTDNEPFKAAMQKFTAKIVSLMKSEELFQSQGGPIIMSQIENEFGPVERQIGAPGKAYTNWAAQMAVGLDTDAPWVMCKQEDAPDPVIDTCNGFYCENYKPNKKYKPKIWTENWTGWYTDFGSANPRRPAEDLAFSVARFIQNGGAFVNYYMYHGGTNFGRTSSGLFITTSYDYDSPLDEYGLPNEPKWGHLRDLHKAIKQCEPALVATDPTLISLGYNLEAHVFNTSDACSAFLANYDTKSSAKATFGNGQYDLPPWSISILPDCETEVFNTAKVGSHSWLKKMTQVHSAFTWQSYNEEPASSSEGDSITADALWEQVNVTRDSTDYLWYMTDVNINPDEGFLKNGESPVLTVMSAGHVLHVFINGQLSGTVYGGLGNPKLTFSDGVKLTAGNNKLSLLSVTVGLPNVGLHFETWNAGVLGPVTLKGLNEGTRDLSQQKWSYKVGLKGEALSLHTLSGSDSVEWAGGSSVAKNQPLTWYKATFSAPASNDPLALDMSSMGKGEVWINGQSIGRHWPAYIAHGNCNNCNYAGFYTDNKCRINCGQPSQRWYHVPSSWLNPSGNFLVVFEEWGGDPSGITLVKRT* 728
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g2354 727 SUPERFAMILY (Trans)glycosidases 30 346 IPR017853 -
Apr1g2354 727 PANTHER BETA-GALACTOSIDASE 10 727 - -
Apr1g2354 727 Gene3D Glycosidases 23 346 - -
Apr1g2354 727 PRINTS Glycosyl hydrolase family 35 signature 40 57 IPR001944 GO:0004553|GO:0005975
Apr1g2354 727 PRINTS Glycosyl hydrolase family 35 signature 61 79 IPR001944 GO:0004553|GO:0005975
Apr1g2354 727 PRINTS Glycosyl hydrolase family 35 signature 116 135 IPR001944 GO:0004553|GO:0005975
Apr1g2354 727 PRINTS Glycosyl hydrolase family 35 signature 173 188 IPR001944 GO:0004553|GO:0005975
Apr1g2354 727 PRINTS Glycosyl hydrolase family 35 signature 252 267 IPR001944 GO:0004553|GO:0005975
Apr1g2354 727 PRINTS Glycosyl hydrolase family 35 signature 289 304 IPR001944 GO:0004553|GO:0005975
Apr1g2354 727 PRINTS Glycosyl hydrolase family 35 signature 309 325 IPR001944 GO:0004553|GO:0005975
Apr1g2354 727 PRINTS Glycosyl hydrolase family 35 signature 618 632 IPR001944 GO:0004553|GO:0005975
Apr1g2354 727 PRINTS Glycosyl hydrolase family 35 signature 645 661 IPR001944 GO:0004553|GO:0005975
Apr1g2354 727 Pfam Glycosyl hydrolases family 35 37 341 IPR031330 -
Apr1g2354 727 SUPERFAMILY Galactose-binding domain-like 583 722 IPR008979 -
Apr1g2354 727 Gene3D - 598 727 - -
Apr1g2354 727 SUPERFAMILY Galactose-binding domain-like 403 573 IPR008979 -
Apr1g2354 727 Gene3D - 439 585 - -
Apr1g2354 727 PANTHER BETA-GALACTOSIDASE RELATED 10 727 IPR001944 GO:0004553|GO:0005975
Apr1g2354 727 Pfam Beta-sandwich domain in beta galactosidase 349 419 IPR041392 -
Apr1g2354 727 ProSitePatterns Glycosyl hydrolases family 35 putative active site. 175 187 IPR019801 GO:0004553|GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr1g2354 Apr-Chr1 33199886 33205644 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr1g2354 15 726 Glycoside Hydrolase AT3G13750 70.769 0.0 1079
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g2354 - - gmx:100781959 1311.59
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr1g2354 1 33199886 33205644 Apr1g2354 1 33199886 33205644 ECH
Apr9g2523 9 32426118 32434776 Apr1g2354 1 33199886 33205644 PCT