Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g2342 ATGATAAAAGGTAAAGATATTTACGAAGTGTTAGCAACACTTGTGCCCCTCTATGTGGCTTTCACCTTGGCCTATGGCTCAGTACGTTGGTGGAAGATCTTTACTCCAGAACAGTGCTCTGGCATAAACCGCTTTGTAGCAGTGTTTGCAGTTCCCTTTCTTTCCTTTCATTACATATCATCCAATAACCTTTACACTATGAACTTCAGGTTCGTAGCCGCGGATACTCTTCAAAAAGTTGGGATTTTGGTGGGTCTTTTTCTATGGAACACTTTCACAAAGTGGGGTAGCATTGATTGGACCATCACATTCTTCTCACTTTCCACTTTGCCAAACACACTCATCATGGGGATCCCTCTTTTGAAGGCCATGTATGGAGACTTCACAGCAAGCCTCATGGTCCAAATTGTGGTTTTGCAAAGTGGTGTCTGGTCCACTTTTTTGTTGTTCATGTTTGAATATAGAGCTGCTAAGAAACTCATTTTAGAACAATTCCCTGAGAGTGCAGGGGCCATAACTTCCCTAAGGGTTGATTCAAATGTTAGTTCTCTCAATGGTAAGGAACCATTGCAAGCTGATGCAGAGATTGTTGAAAATGGGAATCTTCATGTGGTGGTGAGGAATTTGTCACGTTCTATGTCCATGTTTTCTTCATTTAACAAGTCCCATTCAATTTCAACACCAAGAGCATCAAATCTAACTGGGGTTGAGATTTATTCGGCTCAGTCATGTAGAGAACCAACGCTAAGAGCATCAAGTTTTAGTGGCACAAATTTCAATACAACTAGTCTCAAAAGTGTTGGTTTTGAAGAAGAGAAGTTGAAGATGGATAGGAACAAATTTTGGAGGAGCAAGAGTTGTAGTAACGAGGTTTATAAGGGGGGTTTGGTTTCTCACCCATCTTTAAAGCCAATGTTTCCTGGGTCATACAGTGTTGGGCAAAGTAGTGAAGATATGAGGGGTGGTGCAACTAACAAGGAATTGCACATGTTTGCGTGGAGCTTAATTAATGCATCACCAAATTCCGATGTTCAACATGCAGCGAATGGAGTTTCTTCTGCTAACTTTGGTACCATTGAACCTTCCAAGGCTGTTGATGCTCCCCAAGAACCTGATTCCTCCAAAGCTGTGAATGAATTGATTGACAGGAATCCTAGTCCTAATGGAAATAGAGAAAGGAAGCTTGAGATTGAGGAAAGAATGTTGGGGAGCCCGAAGGAAATGAACATTGAAGAAAGCAACGAAAACAAAAAGCAACAAATGCCAAGTGCTATTGTCATGACAAGGCTCATTCTCATCATGGTTTGGAGAAATATCATTAGAAATCCCAATACATACGCAAACGTTTTGGGTCTCGCTTGGTCTCTCATGTCATTCAAGTTGAACATCAAATTGCCGTCTATTGTACAAGGTTCCATTTCAATATTGTCTAATACCGGGTTAGGAATGGCCATGTTCAGCCTAGGACTATTCATGGCTTTACAACCTAAAATCATTACTTGTGGAAAAACTCGGGCTGCAATATCAATGGCAATTAGGTTCTTGATTGGTCCAGGAGTGATGGCTGCAACCTCCAAACTCATGAGTATCCGTGGAGCTCTTTTACAAGTTGCAATTGTTCAGGCTGCTCTTCCTGAGGGTGTGGTTCCCTTTGTATTCGCCAAGGAGTATAATCTCCACGCAGACATACTCAGCACTGCGGTTATCTTTGGAATGATTATTGCATTGCCCGTAACAATAATCTACTACGTGCTTCTTGGACTCTGA 1767 0.4165 MIKGKDIYEVLATLVPLYVAFTLAYGSVRWWKIFTPEQCSGINRFVAVFAVPFLSFHYISSNNLYTMNFRFVAADTLQKVGILVGLFLWNTFTKWGSIDWTITFFSLSTLPNTLIMGIPLLKAMYGDFTASLMVQIVVLQSGVWSTFLLFMFEYRAAKKLILEQFPESAGAITSLRVDSNVSSLNGKEPLQADAEIVENGNLHVVVRNLSRSMSMFSSFNKSHSISTPRASNLTGVEIYSAQSCREPTLRASSFSGTNFNTTSLKSVGFEEEKLKMDRNKFWRSKSCSNEVYKGGLVSHPSLKPMFPGSYSVGQSSEDMRGGATNKELHMFAWSLINASPNSDVQHAANGVSSANFGTIEPSKAVDAPQEPDSSKAVNELIDRNPSPNGNRERKLEIEERMLGSPKEMNIEESNENKKQQMPSAIVMTRLILIMVWRNIIRNPNTYANVLGLAWSLMSFKLNIKLPSIVQGSISILSNTGLGMAMFSLGLFMALQPKIITCGKTRAAISMAIRFLIGPGVMAATSKLMSIRGALLQVAIVQAALPEGVVPFVFAKEYNLHADILSTAVIFGMIIALPVTIIYYVLLGL* 589
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g2342 588 TIGRFAM 2a69: auxin efflux carrier 1 588 IPR014024 -
Apr1g2342 588 Pfam Membrane transport protein 10 583 IPR004776 GO:0016021|GO:0055085
Apr1g2342 588 PANTHER AUXIN EFFLUX CARRIER COMPONENT 1B-RELATED 1 588 - -
Apr1g2342 588 PANTHER AUXIN EFFLUX CARRIER COMPONENT 2 1 588 IPR033526 GO:0010315|GO:0010329
Apr1g2342 588 MobiDBLite consensus disorder prediction 362 393 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr1g2342 Apr-Chr1 33084862 33089028 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr1g2342 1 588 Organic Solute Cotransporters AT1G23080 49.444 0.0 546
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g2342 K13947 - vvi:100256460 692.575
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr9g2538 9 32555447 32558590 Apr1g2342 1 33084862 33089028 PCT