Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g2339 ATGGATATGTACCAATTGCAACAATTTCCACAGCCCATGACAAAGATGGATACGATGATGAGAAAGAGGGAGGGGAGCAAAGGCACCGAGAAAGCAAGGCTTCAAGTTCTGGATTTGAGTTGCTTGTCTTTGGACTCTCTTCCCAAACCTTCGTTTGATTTAGCGACCATTTGCATGTTGAACCTATCCAATAACAATCTCCAGGAAATTCCGGAATCCTTAACGGCGAGACTACTCAACTTGGAGGTCTTGGACGTGTGCTCCAATCAGCTCAGGTCCCTCCCCAATTCCATTGGTTGCCTCTCTAAGCTCAAGGTTTTGAATGTCTCTGGAAATTTCATCGAATTCCTCCCCAAAACCATTGAGAATTGCAGAGCCTTAGAAGAACTGAATGCCAACTTCAACAAGCTGAGCAAGCTGCCAGACACAATAGGTTTTGAGCTCATAAACCTCAAGAAGCTAGCAGTGAACTCCAACAAGCTAGTGTTTCTTCCTAGCTCCACCTCACACCTAACAGCTTTGAAGGTTCTTGATGCACGTTTGAATTGCCTCAGGGCTCTTCCCGAGGACCTTGAGAATCTCATCAACCTTGAGACTCTGAATGTGAGCCAAAATTTCCAGTACCTTGAGTCCCTCCCCTACTCCATAGGTCTCCTCTTGTCCCTGGTTGAATTAGACGTTAGCTACAACAAGATCAAGACCTTGCCTGAATCAATTGGATGTCTCAAGAAGCTACAGAAGTTAAGTGTGGAAGGAAACCCACTTAGTTGTCCTCCAGTGGATGTGGTAGAGCATGGACTGCATGCGGTGATGGAGTATATGTGTCAAAAGATTAACTCAAACCATCAAAGCCCAACCAAGAAGAGGTGGTGGGTGGGGAAATTGGTGAAATGTGGGACCTTTGATAGACCAATGAAAAGTGGGAAACGAGAACATGCTGGTTACAAGATGCTTCAGTTTCAGTCTATCAATGGTCTTGCTTCCCCAGGCTTCATGGGAAAGCTCTCACCTCTTCGCCTCTTCTCACCCCGTCGTTCCTTCAGTTGA 1047 0.4594 MDMYQLQQFPQPMTKMDTMMRKREGSKGTEKARLQVLDLSCLSLDSLPKPSFDLATICMLNLSNNNLQEIPESLTARLLNLEVLDVCSNQLRSLPNSIGCLSKLKVLNVSGNFIEFLPKTIENCRALEELNANFNKLSKLPDTIGFELINLKKLAVNSNKLVFLPSSTSHLTALKVLDARLNCLRALPEDLENLINLETLNVSQNFQYLESLPYSIGLLLSLVELDVSYNKIKTLPESIGCLKKLQKLSVEGNPLSCPPVDVVEHGLHAVMEYMCQKINSNHQSPTKKRWWVGKLVKCGTFDRPMKSGKREHAGYKMLQFQSINGLASPGFMGKLSPLRLFSPRRSFS* 349
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g2339 348 SMART LRR_bac_2 31 50 - -
Apr1g2339 348 SMART LRR_bac_2 219 238 - -
Apr1g2339 348 SMART LRR_bac_2 194 215 - -
Apr1g2339 348 SMART LRR_bac_2 101 120 - -
Apr1g2339 348 SMART LRR_bac_2 148 167 - -
Apr1g2339 348 SMART LRR_bac_2 54 73 - -
Apr1g2339 348 SMART LRR_bac_2 78 97 - -
Apr1g2339 348 SMART LRR_bac_2 171 190 - -
Apr1g2339 348 SMART LRR_bac_2 124 143 - -
Apr1g2339 348 Gene3D Ribonuclease Inhibitor 2 145 IPR032675 -
Apr1g2339 348 Gene3D Ribonuclease Inhibitor 147 276 IPR032675 -
Apr1g2339 348 PANTHER PLANT INTRACELLULAR RAS-GROUP-RELATED LRR PROTEIN 1 342 - -
Apr1g2339 348 SMART LRR_typ_2 242 265 IPR003591 -
Apr1g2339 348 SMART LRR_typ_2 54 77 IPR003591 -
Apr1g2339 348 SMART LRR_typ_2 78 100 IPR003591 -
Apr1g2339 348 SMART LRR_typ_2 101 124 IPR003591 -
Apr1g2339 348 SMART LRR_typ_2 125 147 IPR003591 -
Apr1g2339 348 SMART LRR_typ_2 171 194 IPR003591 -
Apr1g2339 348 SMART LRR_typ_2 219 241 IPR003591 -
Apr1g2339 348 SMART LRR_typ_2 148 170 IPR003591 -
Apr1g2339 348 Pfam Leucine rich repeat 80 137 IPR001611 GO:0005515
Apr1g2339 348 ProSiteProfiles Leucine-rich repeat profile. 80 101 IPR001611 GO:0005515
Apr1g2339 348 ProSiteProfiles Leucine-rich repeat profile. 221 242 IPR001611 GO:0005515
Apr1g2339 348 PANTHER LEUCINE-RICH REPEAT-CONTAINING 1 342 - -
Apr1g2339 348 SUPERFAMILY L domain-like 34 260 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr1g2339 Apr-Chr1 33067504 33072544 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr1g2339 55 258 Receptor kinase-like Gene Family AT5G46330 31.489 1.60e-11 63.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g2339 - - gmx:100775711 556.984
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr1g2339 1 33067504 33072544 Apr1g2339 1 33067504 33072544 ECH
Apr9g2540 9 32576740 32581182 Apr1g2339 1 33067504 33072544 PCT