Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g2325 ATGGGAACGTTTCAGAGCTTCAGGAAAGCCTATGGAGCTCTTAAGGACTCCACCAAGGTTGGCCTGGCAAAAGTCAATAGTGAATACAAGGAGTTGGATATTGCAATTGTAAAGGCTACCAATCATGTGGAATATCCTCCCAAAGAACGTCATATTCGAAAAATATTCTATGCGACATCAGCACATCAACCACGAGCAGATGTGGCATACTGCATTCACAAACTTTCTAAAAGACTCTCCAAGACGCGAAGCTGGATAGTTGCTATAAAAACATTGATAGCCATTCATAGAACTTTGAGAGAGGGCGATCCTACTTTTAGAGAAGAGATTCTGAACTACTCACATAGGGGACATATTCTTCAAATATCCAATTTCAAAGATGATTCAAGTCCTATGGCTTGGGATTGTTCAGCATGGGTTCGAACTTATGCTTTATTTTTGGAAGAAAGACTCGAATGCTTTAGAGTACTTAAATACGACATCGAATCTGAACGTTTAACAAAATCATCACAAGCTGCAACTAAAGCACATAGCAGAACTCGATCATTAGCTAGTAATGATCTTTTGGACCAATTACCTGCACTACAGCAACTTTTATACCGCCTTATTGGTTGTCAGCCTGAAGGATGTGCTTATAGCAATTATCTAGTACAATATGCATTGGCCCTGGTACTGAAAGAAAGTTTCAAAATATATTGTGCACTCAACGATGGAATCATCAATCTTGTAGACATGTTCTTTGACATGTCAAGACATGATGCGGTGAAGGCTCTAAATATTTATAAAAGAGCAGGCCAACAGGCTGAAAATCTTGCTGACTTCTATGAATACTGCAAAGGCCTGGAGCTCGCTAGGAATTTTCAGTTTCCAACACTTAGACAGCCACCTCCCTCTTTCCTTGCAACAATGGAAGAATACATTAGAGAAGCACCTCAAACAGGCTCTCTTAATAAAAGATTGGTAAGAAAAAGTGAATATGAAGAAAATGATGAATCACCTGAAGAAGAATCTGAGCCCAATGAACCTGAACCTGAAAAGCCTCAAGAAAATGAAGAACAAGTTGAAGAAGTTACCAAGGAAGAATCGGAGGTAGAGGAAGAAACACAAACACAAGAAGAAGAGGCTGAGCCTCCTCCTTTGATAGCAACTGATGATGCTACAAATGATTTATTGGGTTTGGATGAAATAAATCCAAAAGCTGCACAACTAGAGGAAAGTAATGCCTTGGCACTTGCAATCGTACCACCTGGTGGAAATAATTCAAACAATCTTGCTTTGAGTAACATTGGCGGGACTACTGGTTGGGAACTTGCACTGGTTACAACACCAAGTAACCATACTAGTCAAGCTCCAGATCGCAAAATGGCTGGTGGGTTTGACAAGTTGTTACTAGACAGTTTGTATGAAGATGAAAACGCTAGGAGACAACTTCAACTCCAAAATGCAGGTTATGGACATGGGGGAGCAATGGCTACACAGAATCCATTTCATCAATATAATCAGCATGACCCATTTGCAATGTCCAACAACGTAGCACCTCCACCTAATGTGCAAATGGCATTAATGGCTCAACAACAACAAGAGCAACAAATGATGTTCCAACAACAACAAATGATGTACCAACCACAACAACAACAACAACAACATAACATGATGATGGTCCCTCACCAACAACCGTATAACCAATACCCTCAACAAATGCAAACTACAGGTTCTCATAATCCATTTGGAGATCCTTTACCTGTACCGAATTATCCTCATAATTCCACGCCTCAACAAGGAAATTATAATTTAATGTAG 1800 0.3989 MGTFQSFRKAYGALKDSTKVGLAKVNSEYKELDIAIVKATNHVEYPPKERHIRKIFYATSAHQPRADVAYCIHKLSKRLSKTRSWIVAIKTLIAIHRTLREGDPTFREEILNYSHRGHILQISNFKDDSSPMAWDCSAWVRTYALFLEERLECFRVLKYDIESERLTKSSQAATKAHSRTRSLASNDLLDQLPALQQLLYRLIGCQPEGCAYSNYLVQYALALVLKESFKIYCALNDGIINLVDMFFDMSRHDAVKALNIYKRAGQQAENLADFYEYCKGLELARNFQFPTLRQPPPSFLATMEEYIREAPQTGSLNKRLVRKSEYEENDESPEEESEPNEPEPEKPQENEEQVEEVTKEESEVEEETQTQEEEAEPPPLIATDDATNDLLGLDEINPKAAQLEESNALALAIVPPGGNNSNNLALSNIGGTTGWELALVTTPSNHTSQAPDRKMAGGFDKLLLDSLYEDENARRQLQLQNAGYGHGGAMATQNPFHQYNQHDPFAMSNNVAPPPNVQMALMAQQQQEQQMMFQQQQMMYQPQQQQQQHNMMMVPHQQPYNQYPQQMQTTGSHNPFGDPLPVPNYPHNSTPQQGNYNLM* 600
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g2325 599 MobiDBLite consensus disorder prediction 354 373 - -
Apr1g2325 599 ProSiteProfiles ENTH domain profile. 24 161 IPR013809 -
Apr1g2325 599 PANTHER CLATHRIN ASSEMBLY PROTEIN 1 586 IPR045192 GO:0048268|GO:0072583
Apr1g2325 599 Gene3D ANTH domain 173 327 IPR014712 GO:0005545|GO:0030136|GO:0030276|GO:0048268
Apr1g2325 599 SUPERFAMILY ENTH/VHS domain 31 162 IPR008942 -
Apr1g2325 599 SUPERFAMILY GAT-like domain 178 309 - -
Apr1g2325 599 SMART enth_2 30 161 IPR013809 -
Apr1g2325 599 MobiDBLite consensus disorder prediction 567 599 - -
Apr1g2325 599 Gene3D - 5 161 IPR008942 -
Apr1g2325 599 Pfam ANTH domain 31 309 IPR011417 GO:0005543
Apr1g2325 599 Coils Coil 350 374 - -
Apr1g2325 599 MobiDBLite consensus disorder prediction 317 385 - -
Apr1g2325 599 PANTHER CLATHRIN ASSEMBLY PLANT-LIKE PROTEIN 1 586 - -
Apr1g2325 599 CDD ANTH_N 32 154 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr1g2325 Apr-Chr1 32844090 32851514 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g2325 K20044 - gmx:100783084 885.56
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr1g2325 1 32844090 32851514 Apr1g2325 1 32844090 32851514 ECH
Apr9g2556 9 32761619 32767230 Apr1g2325 1 32844090 32851514 PCT