Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g2148 ATGGGTGTCATGACTAGTAACCGTAAGCGTCCCGAAGAATGCATGAACGTTAATCACACCAATTCTGATTCCCACAGGAAAAAACCCAAATTATCGACCCGACCCGTTTCTTCCTCGAACAACGTCGTTTCCCGAATTTCCCGGTACCCGGAGACCAAGTTACCGTTGGCGAGGGAGGTTCACGCGCCGTGCAGGCCCCGAAAATTCGAACTTTGGAGGTTTAGGGCTAGGGCTAGTGCCGGTGACGACATGGGCAACGCTCTATTCGGAAATTACGAGAAGGCGAAGTTTTCGGCATTGTCGAAATGCAAGTTTTTGTCGCATAAAGGGAAGGAGGTGATAGATGTGGACGCAGAGAGTGAAGAACCTCGATTCCGGTCATACGAGGTTTCGGGAGATTCGAGTGTGGAAGAGGTGGTTGCGGTGAGTGATGATGATGATGACGATTTGGGTGACAAGGTTAGGGTTCAGCAGCAGTCAACGTCTTCGTTGGATTCAGAGTTGACCAATGGGAACTTGAAGGTTGTGAGTGGTGGAAAGGTGTGGGGTTCTGAGATTCATGATCTTTCGAGTGTTCATGTGTATAAGAAGTTGCTTGAGGCTGTTGGGAGGAGAAGTGACTCCATTAAGAGGTTGGATTTTGAAATTAAACTGAATGAGAAGCGCAGAGACACTTATAATTTGTTGCGTCCCAAGAAGGAATCAGTGGAGGAAGTGCCACATGAGCCTTTTGTCTCACTTACAACTGAGGAAGAAGATGAGGTTAAACGCGCCTTTTCTGCCAACTGGAAGAAGATTTTGGTTACCCATGAGAGTTCTAATATTGAGATCACAGGAGAAAAGTTTCAGTGTCTTAGGCCAACTGCATGGTTAAATGATGAGGTGATAAATTTATACCTTGAGTTGCTGAAAGAGAGGGAGCAAAGAGAACCACGGAAATTTCTGAAATGTCATTTTTTCAATACCTTTTTCTACAAAAAGTTAACTAGTGGTAATAATGGTTATGAGTTCAAGTCTGTCAGAAGATGGACGAGCCAACGGAAATTGGGATATGGTCTACTTGAATGTGATAGAATATTTGTACCTATCCATCAAGAGATACATTGGTGCCTGGCAGTTATCAATAAGAAAGAAAAGAAATTCCAGTATCTTGACTCGCTGAAAGGAAGGGATAGTTATGCGCTAACAGTGCTGGCTAGATATTTTGTGGATGAAGTAAAGGACAAGACTGGAAAAGACATTGATGTACAAACTTGGGAAAAAGAATTTGTTGAAGACCTTCCTGTGCAGGAAAATGGGTTTGATTGTGGAGTGTTCATGATCAAATATGCTGACTTCTATAGCAGGGGCCTGGGGCTGTGTTTTAACCAGGAACACATGCCTTACTTCCGGCGTAGGACGGCTAAGGAGATCTTGAGATTGAAAGCTGAATGA 1434 0.4414 MGVMTSNRKRPEECMNVNHTNSDSHRKKPKLSTRPVSSSNNVVSRISRYPETKLPLAREVHAPCRPRKFELWRFRARASAGDDMGNALFGNYEKAKFSALSKCKFLSHKGKEVIDVDAESEEPRFRSYEVSGDSSVEEVVAVSDDDDDDLGDKVRVQQQSTSSLDSELTNGNLKVVSGGKVWGSEIHDLSSVHVYKKLLEAVGRRSDSIKRLDFEIKLNEKRRDTYNLLRPKKESVEEVPHEPFVSLTTEEEDEVKRAFSANWKKILVTHESSNIEITGEKFQCLRPTAWLNDEVINLYLELLKEREQREPRKFLKCHFFNTFFYKKLTSGNNGYEFKSVRRWTSQRKLGYGLLECDRIFVPIHQEIHWCLAVINKKEKKFQYLDSLKGRDSYALTVLARYFVDEVKDKTGKDIDVQTWEKEFVEDLPVQENGFDCGVFMIKYADFYSRGLGLCFNQEHMPYFRRRTAKEILRLKAE* 478
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g2148 477 PANTHER SENTRIN/SUMO-SPECIFIC PROTEASE 1 148 - -
Apr1g2148 477 PANTHER SENTRIN/SUMO-SPECIFIC PROTEASE 161 476 - -
Apr1g2148 477 SUPERFAMILY Cysteine proteinases 243 475 IPR038765 -
Apr1g2148 477 MobiDBLite consensus disorder prediction 1 41 - -
Apr1g2148 477 Pfam Ulp1 protease family, C-terminal catalytic domain 290 471 IPR003653 GO:0006508|GO:0008234
Apr1g2148 477 ProSiteProfiles Ubiquitin-like protease family profile. 275 447 IPR003653 GO:0006508|GO:0008234
Apr1g2148 477 MobiDBLite consensus disorder prediction 12 30 - -
Apr1g2148 477 Gene3D Adenoviral Proteinase; Chain A 233 475 - -
Apr1g2148 477 PANTHER UBIQUITIN-LIKE-SPECIFIC PROTEASE 1A 1 148 - -
Apr1g2148 477 PANTHER UBIQUITIN-LIKE-SPECIFIC PROTEASE 1A 161 476 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr1g2148 Apr-Chr1 30958699 30966292 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g2148 K08592 - gmx:100802161 668.692
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr9g2244 9 30285771 30290904 Apr1g2148 1 30958699 30966292 PCT