Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g0903 ATGTTGGAGGGTCCAACCTTTCTTGTTTCAAGGGACTTGCCAAGCTCGTGTGAGCCAGAGAGTGAGTGGATTTACAATACCTTCTGTGTGATGAAGCTTGTGAACACTAAGCGTCGACTGGAACTAGAGGAAGAAGCTGTGTTGAGGAAGTCATGCAAGCTTTCAGATGTTCCTGAGGAAAGGGAAACACTGAAGAATATCTCTGATCTTTCCTTATCCCATAACCAAGTGAATGACCAAAACCATGCCGGTGATCAGTCAGACTCAAGTTCACTTATCTACCAACTCGGTCGGGACATCTCAATTAATTGTCTCCTACGATGCTCAAGGTCTGACTATGGTTCAATTGCCTCATTGAATCAAAGTTTTCGATCTCTCATTCGGACTGGAGAGCTTTATAGGCTGAGGCGGCAGATGGGTATCATAGAGCATTGGGTTTACTTCTCTTGTAATCTCCCGGAGTGGGAGGCGTTTGATCCAAACAGCGGTCGATGGATGCGCTTGCCTAGAATGCCTTCTAATGAATGTTTTATCTGTTCAGATAAGGAGTCATTGGCTGTTGGTACTGAGCTTCTCGTTTTTGGGAAGGAAATAATGTCTCCTGTCATTTACAGATATAGCATTTTGATGAACTCATGGTCATCTGGTATGGAAATGAATGTTCCTAGATGCTTGTTCGGTTCTGCCAGCCTTGGAGAAGTTGCCATTTTAGCTGGTGGTTGTGATCCACGGGGCAACATCTTGAGCTCAGTTGAGCTTTATAACTCAGAAACTGGAACTTGGGAGGTTCTTCCAAACATGAATAAAGCAAGGAAAATGTGTTCTGGTGTATTTTTAGATGGAAAATTTTATGTCATTGGTGGAATTGGAGTTGGTAACTCAAAGCAACTTACAAGTGGTGAGGAGTTTGATTTGCAGACAAGAAAATGGCGTGAAATACCCAACATGTTCCCTGGGCGTAATGCGGGATCTGGGGTGACTGAGGTACCAGCTGCTGCTGAGGCACCTCCTTTAGTTGCAGTTGTAAATAATGTATTGTATGCTGCAGATTATGCCCAGCAAGAAGTAAGGCAATATAATAAAGACAGTAACACATGGGTCACTATTGGAAGATTACCTGACCGGATAGTCTCGATGAATGGCTGGGGATTAGCCTTTCGAGCATGTGGAAATCGCCTAATTGTTATTGGTGGGCCAAGAGCTTTGGATGGAAGGGTAATTGAGATCAATGCATGTGTCCCAGGTGAAGGTGCACCACAGTGGAACCTGCTTGCTAGCAAGCAATCGGGGAGCTTTGTGTATAACTGCGCAGTGATGGGATGCTGA 1326 0.4457 MLEGPTFLVSRDLPSSCEPESEWIYNTFCVMKLVNTKRRLELEEEAVLRKSCKLSDVPEERETLKNISDLSLSHNQVNDQNHAGDQSDSSSLIYQLGRDISINCLLRCSRSDYGSIASLNQSFRSLIRTGELYRLRRQMGIIEHWVYFSCNLPEWEAFDPNSGRWMRLPRMPSNECFICSDKESLAVGTELLVFGKEIMSPVIYRYSILMNSWSSGMEMNVPRCLFGSASLGEVAILAGGCDPRGNILSSVELYNSETGTWEVLPNMNKARKMCSGVFLDGKFYVIGGIGVGNSKQLTSGEEFDLQTRKWREIPNMFPGRNAGSGVTEVPAAAEAPPLVAVVNNVLYAADYAQQEVRQYNKDSNTWVTIGRLPDRIVSMNGWGLAFRACGNRLIVIGGPRALDGRVIEINACVPGEGAPQWNLLASKQSGSFVYNCAVMGC* 442
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g0903 441 PANTHER F-BOX/KELCH-REPEAT PROTEIN SKIP11 1 441 - -
Apr1g0903 441 Gene3D - 135 414 IPR015915 GO:0005515
Apr1g0903 441 PANTHER GALACTOSE OXIDASE/KELCH REPEAT PROTEIN-RELATED 1 441 - -
Apr1g0903 441 SUPERFAMILY Kelch motif 150 437 IPR015915 GO:0005515
Apr1g0903 441 Pfam Kelch motif 222 268 IPR006652 GO:0005515
Apr1g0903 441 Pfam Kelch motif 270 316 IPR006652 GO:0005515
Apr1g0903 441 SMART kelc_smart 234 281 IPR006652 GO:0005515
Apr1g0903 441 SMART kelc_smart 282 331 IPR006652 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr1g0903 Apr-Chr1 12318472 12321507 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr1g0903 90 315 EF-hand Containing Proteins AT4G39560 27.391 5.49e-12 64.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g0903 - - gmx:100788507 786.949
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr1g0903 1 12318472 12321507 Apr9g3015 9 36997479 37009621 ECH
Apr1g0903 1 12318472 12321507 Apr1g0903 1 12318472 12321507 ECH