Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g0899 ATGTTCAAGTCCTTCTTGTTTGCAACTTTTCTCTTGGCACTTCTGCTCATTGCTCAAGCACGTGAAGATGATAAAAACATTGGGCTTTATCAACTCAAAAGAGGAAATATGCAGTTGAATTTTACAAACTATGGTGCAACAATTATCTCTGTCATTCTCCCTGATAGACATGGTAATTTAGCTGACGTTACGCTTGGCTACGATTTCATTCAGCAATACCAGAATGATACATGTTACTTCGGAGCCCTTATTGGACGTGTGGCAAATAGAATTGGACACGCTCAGTTCACTTTGGATGGCAAAACCTATCAATTGCCTGCTAATGATCACGGGAACACACTCCATGGTGGAACAACAGGGTTCAGTGATGTTGTATGGACAGTAGAAAGCCACAGGGAAGATAGTCACATAACATTCACCTATGACAGTTGTGACAGAGAAGAAGGCTTCCCTGGCCAACTCAAAGTCTCTGTGACATACATGTTAATTGGAACAAACAAATTGGCTGTGAAAATGATTGCCAATCCAGTAGACAAAGCCACACCCGTGAATCTAGCACAGCACTCATACTGGAACCTGAGGGGTCACAACAGTGGTGACATCCTCTCACACAAAGTTCAGATTTTTGGGTCACATATCACACCAGTGGATGACAAGCTCATCCCAACTGGTGAAATCCAATCTGTGAAGGGCACCCCATATGATTTCCTTGAACCAAAAGAAGTGGGTAGCCAAATCAATGACCTTCCAGGTCTATATGACATGAACTATGTCCTTGACAAAGGTAGCTCCGAGCACTTTAGAAAGGTGGCAATAATAAAAGACGATGTCTCTGGTAGAAAGCTAGAGTTATGGTCAAACCAACCTGGTGTTCAGTTCTATACTAGTGGCATGTTGAAGGATACTAAGGGCAAAGATGGAGCCATTTATCATAAGCATGCTGGTATTGCCATGGAAACACAGGGTTTTCCTGATGCTGTCAATCGTCCAAATTTCCCATCACAGATTGTGCGTCCTGGGGAGACATACAAGCACTTCATGGTCTACAGATTCACAGCTGAATAA 1065 0.4282 MFKSFLFATFLLALLLIAQAREDDKNIGLYQLKRGNMQLNFTNYGATIISVILPDRHGNLADVTLGYDFIQQYQNDTCYFGALIGRVANRIGHAQFTLDGKTYQLPANDHGNTLHGGTTGFSDVVWTVESHREDSHITFTYDSCDREEGFPGQLKVSVTYMLIGTNKLAVKMIANPVDKATPVNLAQHSYWNLRGHNSGDILSHKVQIFGSHITPVDDKLIPTGEIQSVKGTPYDFLEPKEVGSQINDLPGLYDMNYVLDKGSSEHFRKVAIIKDDVSGRKLELWSNQPGVQFYTSGMLKDTKGKDGAIYHKHAGIAMETQGFPDAVNRPNFPSQIVRPGETYKHFMVYRFTAE* 355
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g0899 354 CDD galactose_mutarotase_like 29 351 - -
Apr1g0899 354 PANTHER ALDOSE-1-EPIMERASE 3 354 - -
Apr1g0899 354 PIRSF GALM 17 354 IPR015443 GO:0016853|GO:0019318
Apr1g0899 354 PANTHER ALDOSE 1-EPIMERASE 3 354 - -
Apr1g0899 354 Gene3D - 17 353 IPR014718 GO:0030246
Apr1g0899 354 Pfam Aldose 1-epimerase 29 350 IPR008183 GO:0005975|GO:0016853
Apr1g0899 354 SUPERFAMILY Galactose mutarotase-like 20 351 IPR011013 GO:0003824|GO:0005975|GO:0030246
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr1g0899 Apr-Chr1 12148900 12150636 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr1g0899 11 353 Miscellaneous Gene Families AT3G47800 60.058 2.45e-159 449
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g0899 K01785 - gmx:100807070 575.859
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr1g0899 1 12148900 12150636 Apr9g3017 9 37018455 37020800 ECH
Apr1g0899 1 12148900 12150636 Apr1g0899 1 12148900 12150636 ECH