Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g0819 ATGAAGGAACTGAATATGCCTGGAATTGTTACAAATGGGGTTCATGATGAAGGGGAAGATAATGAGATGAATGGGAACCATGAATCCCTCTCTAAGGAGGCCTTAAATTCAGTTAAGTCCCCAAGGAGTTCCTTTGGTCCACAAAGACGTCACGGCGATGGTGCTAATGTTGCTGTTGATGGGGTGGCTGAGCCATCCATTCAGCAGCTTTATGAAAATGTCTGTGACATGCAGAGTTCTGATCAGTCACCCTCAAGACAGAGTTTTGGATCTGATGGTGAAGAGTCTAGAATCGATTCGGAGTTGCGCCATCTAGTTGGAGGACGAATGAGGGAGGTGGAGATAATGGAAGAGGAAGTGGGGGTGGAAAAAGGGCCGGATGAGGGGAGTTCAAGTAGTGAAATATCTTGTGGATTGGATGGTTTATCCAATGAGAAGAAGTTGGATAAGGTGGATGAGGTTCTGGAGATTCAACCTGCAGTTACAAGTTCTGTTTCTTCAGAAAAATCTGTCAAAGCATCTAATTCACAGTTGGGACCTGAGATTTCGCCAAAATTAGCACCCAAGGGAAAACGTTCTCTTGCAAAAGCTCCTACTGGAAAAAAGAATGATAAGCCTTTGAGGAAACAAGTTAGTGGAGTTACTGGTGTGAAGAATTTAAAGAATTCTTCTTCTGGAAAGTCAATGTCACGAAATCGAGTAGACAATGCAGCTGAATCAACATTAGATAGACCAGAGCAGGCACCAGTATTACTAAAGCAAGCAAGAGATCTGATCTCATCAGGAGATAATCCGCAGAAGGCTCTTGAATTAGCGCTTCAAGCAAAGAAATTGTTTGAGAAGTTTGGTAATGAGAAGCCAAGTTTGGAGTTGGTTATGTGTCTACATGTTACAGCAGCAATATATTGCAACTTGGGTCAATACAATGAGGCGATTCCAATTCTTGAGCGCTCAATTGAGATTCCTGTTGTTAATGAAAGTCAACAGCATGCCCTTGCTAAATTTGCTGGTCACATGCAATTGGGAGACACCTACGCTATGCTGGGCCAGCTTGAGAATTCAATTGTGTGCTACACCACTGGGTTAGAAGTCCAGAGGGAGGTGTTGGGAGAGACAGACCCAAGAGTTGGTGAGACTTGTCGGTATGTGGCCGAGGCTAATGTTCAAGCTTTGCAATTTGATGAAGCAGAGAGGCTATGTCAAATGGCTCTTGACATTCATAAAGCAAATAGTTCAACCCCATCTCTTGAAGAGGCAGCTGATAGGAGGCTCATGGGCCTTATATGTGAAACAAAGGGAAACCACGAAGCAGCTCTTGAGCATCTTGTTTTAGCCAGCATGGCAATGGTAGCAAATGGCCAGGAAATGGAAGTGGCCTCTGTTGACTGCAGCATTGGAGACACATACTTATCCTTGTCACGATATGACGAGGCTGTCTTTGCATACCAGAAAGCACTAACTGTTTTCAAGACCAGCAAAGGGGAGAACCACCCAGCAGTTGGATCAGTCTTTTTACGTTTGGCCGACTTGTATAACAGGACAGGAAAGTTAAGGGAATCAAAATCATATTGTGAGAGTGCACTTAGAATATACGAAAATCCAATGCCTGGAGTTCCTCCAGAGGAGGTTGCTAGTGGTCTTACAAATATTTCAACTATCTATGAGTCAATGAATGAGCTTGAACAGGCGCTTAAATTACTGCAGAAAGCACGGGAGATGTATAATGATGCCCCGGGTCAGCAAAGCACAATCGCAGGAATTGAAGCTCAGATGGGAGTCATGTACTACATGTTGGGGAACTATACTGAATCTTACAATACTTTGAAGACCGCTGTTTCAAAGCTTCGTGCAATTGGCGAAAAGAAATCATCCTTCTTTGGTATTGCTCTTAATCAAATGGGACTTGCCTGCGTGCAGCGTTATGCCTTGAATGAGGCTACAGAATTGTTTGAAGAAGCAAAGAGTATTTTGGAACATGAGTATGGACCATATCACCCAGAAACACTTGGTGTATATAGTAATCTAGCTGGCACTTATGATGCCATTGGCAGACTGGATGATGCAATTCAAATTCTGGAGTACGTTGTTAGCACGAGGGAGGAAAAGCTTGGGACAGCAAATCCTGACGTGGATGATGAGAAGAGAAGGTTGGATGAGTTGTTGAAGGAAGCAGGTAGAGTTCGGAGCAGAAAAGCCAGGTCACTTGAGAACCTTCTTGATGGCAATGCTCCTGCTATAAACAACCTTGTTATCAAGGCATGA 2262 0.4372 MKELNMPGIVTNGVHDEGEDNEMNGNHESLSKEALNSVKSPRSSFGPQRRHGDGANVAVDGVAEPSIQQLYENVCDMQSSDQSPSRQSFGSDGEESRIDSELRHLVGGRMREVEIMEEEVGVEKGPDEGSSSSEISCGLDGLSNEKKLDKVDEVLEIQPAVTSSVSSEKSVKASNSQLGPEISPKLAPKGKRSLAKAPTGKKNDKPLRKQVSGVTGVKNLKNSSSGKSMSRNRVDNAAESTLDRPEQAPVLLKQARDLISSGDNPQKALELALQAKKLFEKFGNEKPSLELVMCLHVTAAIYCNLGQYNEAIPILERSIEIPVVNESQQHALAKFAGHMQLGDTYAMLGQLENSIVCYTTGLEVQREVLGETDPRVGETCRYVAEANVQALQFDEAERLCQMALDIHKANSSTPSLEEAADRRLMGLICETKGNHEAALEHLVLASMAMVANGQEMEVASVDCSIGDTYLSLSRYDEAVFAYQKALTVFKTSKGENHPAVGSVFLRLADLYNRTGKLRESKSYCESALRIYENPMPGVPPEEVASGLTNISTIYESMNELEQALKLLQKAREMYNDAPGQQSTIAGIEAQMGVMYYMLGNYTESYNTLKTAVSKLRAIGEKKSSFFGIALNQMGLACVQRYALNEATELFEEAKSILEHEYGPYHPETLGVYSNLAGTYDAIGRLDDAIQILEYVVSTREEKLGTANPDVDDEKRRLDELLKEAGRVRSRKARSLENLLDGNAPAINNLVIKA* 754
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g0819 753 Gene3D Tetratricopeptide repeat domain 620 726 IPR011990 GO:0005515
Apr1g0819 753 Gene3D Tetratricopeptide repeat domain 216 336 IPR011990 GO:0005515
Apr1g0819 753 Gene3D Tetratricopeptide repeat domain 337 445 IPR011990 GO:0005515
Apr1g0819 753 MobiDBLite consensus disorder prediction 28 44 - -
Apr1g0819 753 MobiDBLite consensus disorder prediction 161 244 - -
Apr1g0819 753 MobiDBLite consensus disorder prediction 1 57 - -
Apr1g0819 753 ProSiteProfiles TPR repeat profile. 459 492 IPR019734 GO:0005515
Apr1g0819 753 SUPERFAMILY TPR-like 456 580 IPR011990 GO:0005515
Apr1g0819 753 Pfam Tetratricopeptide repeat 458 533 - -
Apr1g0819 753 Pfam Tetratricopeptide repeat 628 693 - -
Apr1g0819 753 PANTHER PROTEIN KINESIN LIGHT CHAIN-RELATED 3 6 742 - -
Apr1g0819 753 SUPERFAMILY TPR-like 584 726 IPR011990 GO:0005515
Apr1g0819 753 MobiDBLite consensus disorder prediction 161 181 - -
Apr1g0819 753 MobiDBLite consensus disorder prediction 116 143 - -
Apr1g0819 753 MobiDBLite consensus disorder prediction 215 236 - -
Apr1g0819 753 MobiDBLite consensus disorder prediction 76 91 - -
Apr1g0819 753 Pfam Tetratricopeptide repeat 293 321 - -
Apr1g0819 753 MobiDBLite consensus disorder prediction 76 103 - -
Apr1g0819 753 Coils Coil 550 577 - -
Apr1g0819 753 ProSiteProfiles TPR repeat profile. 544 577 IPR019734 GO:0005515
Apr1g0819 753 Coils Coil 710 730 - -
Apr1g0819 753 SUPERFAMILY TPR-like 245 443 IPR011990 GO:0005515
Apr1g0819 753 SMART tpr_5 501 534 IPR019734 GO:0005515
Apr1g0819 753 SMART tpr_5 335 368 IPR019734 GO:0005515
Apr1g0819 753 SMART tpr_5 669 702 IPR019734 GO:0005515
Apr1g0819 753 SMART tpr_5 627 660 IPR019734 GO:0005515
Apr1g0819 753 SMART tpr_5 377 410 IPR019734 GO:0005515
Apr1g0819 753 SMART tpr_5 459 492 IPR019734 GO:0005515
Apr1g0819 753 SMART tpr_5 544 577 IPR019734 GO:0005515
Apr1g0819 753 SMART tpr_5 292 325 IPR019734 GO:0005515
Apr1g0819 753 SMART tpr_5 585 618 IPR019734 GO:0005515
Apr1g0819 753 Gene3D Tetratricopeptide repeat domain 446 619 IPR011990 GO:0005515
Apr1g0819 753 PANTHER PROTEIN KINESIN LIGHT CHAIN-RELATED 3 6 742 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr1g0819 Apr-Chr1 10435653 10439819 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g0819 - - gmx:100783201 1196.8
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr1g0819 1 10435653 10439819 Apr9g3097 9 37787614 37792500 ECH
Apr1g0819 1 10435653 10439819 Apr1g0819 1 10435653 10439819 ECH
Apr9g3097 9 37787614 37792500 Apr1g0819 1 10435653 10439819 PCT