Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g0804 ATGCAGTCTTTAAGCATCAAGTTTTGCCTGGGTTTACGGTCAGCCGTTATGACGGACTCCGAGGCGGTGATGAATTGCAGGAACCGGAGGAGAGGGAATTGGAGAGTGATCGTAGCGTGCGGCGGTGCGGAGAGGAACTGGAATGAGAGTTTGAGCTTGTCTCGGAGCCACAATTACGCCATGTTGAAGCACCGGATGGACGCAGCTGCCAAGTCTGAGAATTATGAAGAGGCTGCGAGGATTCGTGACTCGTTGAAGTGCTTTGAAGATGATGTGCCGGTTCTGCGTCTGCGGAGGTTGTTGAAGGAAGCTATTGCTGACGAGAGATTTGAGGACGCAGCAAGATATCGTAATGAGTTAAATGAAATTGCCCCACATTCTCTCTTGAAATGTTCGAGTGATGTTACAACCTCGGGAATCCGAGTCCAAGTTAAGAGTGTATATATAGAGGGCAGAAGTCAGCCTTCAAAGGAGATATATTTCTTTGCATATAAAATCAAAATTACCAATAACACTAACCGCCCTGTTCAGCTTCTCAGAACGCATTGGATTATAACTGATGCTAATGGTAAAACTGAAAATGTCTGGGGAATTGGGGTTCTTGGTCAACAACCAGCTATACTTCCTAGGACTAGTTTTGAATATAGTTCTGCACGCCAATTAAGCACACAAAATGGTCGAATGGAAGGTGACTTTGAGATGATACATGTTGATCGAGTAGGCTCGAGAGCATTTAACGTGGCCATTGCCCCTTTTTCTCTTGCTCTACTTGGAGATGATGATGGTCAAACTATTTGA 798 0.4524 MQSLSIKFCLGLRSAVMTDSEAVMNCRNRRRGNWRVIVACGGAERNWNESLSLSRSHNYAMLKHRMDAAAKSENYEEAARIRDSLKCFEDDVPVLRLRRLLKEAIADERFEDAARYRNELNEIAPHSLLKCSSDVTTSGIRVQVKSVYIEGRSQPSKEIYFFAYKIKITNNTNRPVQLLRTHWIITDANGKTENVWGIGVLGQQPAILPRTSFEYSSARQLSTQNGRMEGDFEMIHVDRVGSRAFNVAIAPFSLALLGDDDGQTI* 266
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g0804 265 Pfam ApaG domain 152 235 IPR007474 -
Apr1g0804 265 Gene3D ApaG domain 130 260 IPR036767 -
Apr1g0804 265 SUPERFAMILY C-terminal UvrC-binding domain of UvrB 59 89 IPR036876 -
Apr1g0804 265 ProSiteProfiles ApaG domain profile. 134 261 IPR007474 -
Apr1g0804 265 Pfam UvrB/uvrC motif 65 86 IPR001943 GO:0005515
Apr1g0804 265 Pfam UvrB/uvrC motif 96 123 IPR001943 GO:0005515
Apr1g0804 265 ProSiteProfiles UVR domain profile. 56 91 IPR001943 GO:0005515
Apr1g0804 265 ProSiteProfiles UVR domain profile. 91 126 IPR001943 GO:0005515
Apr1g0804 265 SUPERFAMILY ApaG-like 136 255 IPR036767 -
Apr1g0804 265 PANTHER OS05G0170800 PROTEIN 38 261 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr1g0804 Apr-Chr1 10060661 10064100 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g0804 - K06195 gmx:100799029 385.571
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr1g0804 1 10060661 10064100 Apr1g0804 1 10060661 10064100 ECH
Apr9g3113 9 37946551 37950134 Apr1g0804 1 10060661 10064100 PCT