Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g0744 ATGGGCGTTTCTTGGCTTGTGGAGGGAAAGTTGAAGGCTGGAAGTGATATGGTTGGAAAGGGTAATTTGAGGACTGAGGACTTGAATTTGTGGTTTGAGAAGCTTATGATGGTTGCTGGGAGTGGGAACAGTGAGAAAGGGGTGAACATGAAGGTTGGGGTCATCACAGAATGGAAGGATATTCCTGTAGAGCTTTTGGTTCAGATTCTGTCCCTTGTGGATGATCAGACGGTGATCACAGCTTCTGGAGTTTGTCGTGGCTGGAGAGATGCTATTTACTTTGGCCTTGCACGTTTATCCCTCTCTTGGTGTAGCAAGAACATGAATAACTTGGTCCTATCTCTCGTTCCTAAATTCACAAAATTGCAAACTCTAATCCTTCGTCAAGACAAGCCTCAACTAGAGGATGATGCTGTTGAGACAATAGCAAAATGCTGCCATGAACTGCAAATCCTGGACCTCAGCAAAAGTTTCAAGCTTACGGATCGGTCACTCTATGCTATAGCCCTTGGTTGTCAAGATCTTACAAAACTGAACATCAGCGGGTGTTCAGCATTCAGTGACAATGCCTTGGCTTACCTTGCCAGTTTCTGCAGAAAACTGAAAGTTCTAAATCTCTGTGGATGTGTTAGAGCTGCATCTGATACTGCGTTACAGGCTATTGGACAATACTGCAATCAGTTACAATCTTTGAACCTTGGATGGTGTGATAATGTTGGTGATATTGGAGTGACTAGTTTAGCATACGGGTGCCCTGATCTTAGGACAGTTGACTTGTGTGGCTGTGTCCGTATAACAGATGATAGTGTGATTGCATTGGCAAATAGATGCCCCCACCTGAGGTCCCTTGGGCTGTACTATTGTAAGAATATAACAGACAGAGCAATGTATTCCTTGGCACACAGCAAGGTGAACAATAACAACAGGATGTGGGGATCTGTGAAAGGAGGAAATGATGAAGATGGTTTAAGGACTCTCAACATTAGCCAATGCACTGCACTCACCCCTTCTGCTGTTCAAGCAGTTTGTGACTCATTCCCTTCACTACACACATGCTCAGGTAGGCATTCACTCATCATGAGTGGCTGTCTCAATTTGACATCTGTGCATTGTGCCTGTGCTGTCCATGCACACCGCACATTCACCTCTTTCCCTTATCCAGCTCATTAA 1170 0.447 MGVSWLVEGKLKAGSDMVGKGNLRTEDLNLWFEKLMMVAGSGNSEKGVNMKVGVITEWKDIPVELLVQILSLVDDQTVITASGVCRGWRDAIYFGLARLSLSWCSKNMNNLVLSLVPKFTKLQTLILRQDKPQLEDDAVETIAKCCHELQILDLSKSFKLTDRSLYAIALGCQDLTKLNISGCSAFSDNALAYLASFCRKLKVLNLCGCVRAASDTALQAIGQYCNQLQSLNLGWCDNVGDIGVTSLAYGCPDLRTVDLCGCVRITDDSVIALANRCPHLRSLGLYYCKNITDRAMYSLAHSKVNNNNRMWGSVKGGNDEDGLRTLNISQCTALTPSAVQAVCDSFPSLHTCSGRHSLIMSGCLNLTSVHCACAVHAHRTFTSFPYPAH* 390
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g0744 389 SMART LRR_CC_2 119 145 IPR006553 -
Apr1g0744 389 SMART LRR_CC_2 320 345 IPR006553 -
Apr1g0744 389 SMART LRR_CC_2 251 276 IPR006553 -
Apr1g0744 389 SMART LRR_CC_2 225 250 IPR006553 -
Apr1g0744 389 SMART LRR_CC_2 172 197 IPR006553 -
Apr1g0744 389 SMART LRR_CC_2 198 224 IPR006553 -
Apr1g0744 389 SMART LRR_CC_2 277 302 IPR006553 -
Apr1g0744 389 SMART LRR_CC_2 146 171 IPR006553 -
Apr1g0744 389 Gene3D Ribonuclease Inhibitor 54 317 IPR032675 -
Apr1g0744 389 PANTHER F-BOX SKP2A-LIKE PROTEIN 17 370 - -
Apr1g0744 389 Pfam Leucine Rich repeat 277 300 IPR001611 GO:0005515
Apr1g0744 389 Pfam Leucine Rich repeat 225 248 IPR001611 GO:0005515
Apr1g0744 389 Pfam Leucine Rich repeat 251 274 IPR001611 GO:0005515
Apr1g0744 389 PANTHER UNCHARACTERIZED 17 370 - -
Apr1g0744 389 SUPERFAMILY F-box domain 58 94 IPR036047 GO:0005515
Apr1g0744 389 Pfam F-box-like 59 92 IPR001810 GO:0005515
Apr1g0744 389 SUPERFAMILY RNI-like 95 369 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr1g0744 Apr-Chr1 8868977 8872984 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g0744 K03875 - gmx:100797840 717.998
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr9g0748 9 13304670 13308795 Apr1g0744 1 8868977 8872984 PCT