Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g0505 ATGGCACAAGCTGAGTTTTGCATGTGGGCACTTTTGATATTGGTTCTAGCTCATTGCCAACTACAAGGTGCTCAAGGGGTACAGTCTATATCAGGTCTTGGTATCAATTGGGGTGCACTAGCATCACACCCTTTGCCTCCAAACATTGTGGTAAATTTGTTGAAGGACAATGGGATCAAGAAGGTAAAACTTTTCGATGCAGATTCTTGGACCGTGAATGCTCTTTCTGGTACTGACATTGAAGTCATGGTTGGAATTCCTAATGCTCAATTGGGTAAATTTGCTAGAAGTAGCGGAGATGCAGAAGATTGGGTGAAAGAAAATCTAACCAAACATTTTCATAATGGGGGTGTGAACATCAGATACGTATCTGTTGGAAACGAACCATTCCTGAAGAGTTACAATGGTTCGTATGTAGGGACTACACTCCCAGCAATGCAAAATATTCAAAAGGCTATTGATAAGGCTGGTATTGGAGACAAAGTGAAGGTGACAACTGCATTGAATGCCGATGTTTATGAGTCTCCTTCGAACAAGCCATCAGATGGAGATTTTCGAAGTGACATAATTGACGTTATGAAACCATTACTTAATTTTCTTCATGAAAGGAGCTCCCCATTTCTTGTCAACATATACCCTTTCCTTAGTTTGCACCAAGTTGAAGGCTTTCCGGAAGATTTAGCATTCTTTGATAGTCAAAGCAAAACGATTGATGACAAAAATGCACAATATAGCAATGTGTTTGATGCGAATTTCGACACTCTTGCTTGGTCATTGAAAAAGGCTGGCTACCCTGACATGAAAATTGTAATTGGGGAAATTGGATGGCCAACTGATGGTGAAAAAAATGCTAATATCAATAATGCACAAAGGTTCTACCAAGGGTTGCTTGAGAAAATGGCAAACAAGAAAGGTACTCCACTAAGACCTGGACCCATGGAGGCATATCTATTTTCTCTTCATGATGAGAACATGAAGAGTATTGAACCTGGTAACTTTGAGCGTCATTGGGGAATTTTTCGCTACGATGGAAAGCCTAAGTTTCCTATAGATTTTTCTGGTCAAGGACAAAATAAATGGCCAGAAGCAGCCAAAGGTGTTCGTTACCAAGAACATAAATGGTGTGTCCTTAGCCAAGATGTTAGGAACTTCAGTCTTGTACCAGATGCATTAAATTATGCTTGTGGAGGTGCTGATTGTACAAGCTTAGGATTTGGTTGTTCTTGTGGAAATTTAGGCCTTCCTGGTAATGCTTCGTATGCTTTTAACCAATACTTTCAGACTAGGGACCAAAGCGTTGAGGCATGTGATTTCAATGGATTGGCCACTATTGTAACGGAGGATCCATCAAAGGGAAGTTGCTTATTCCCTATAGAGATTGAGAGCAGTGGTGACAAGCTCAGAGCAATACATACACTGGGAGGCATTTTAATTGGGTTGTCATTGTTTTTTATAACATTTGCATAA 1467 0.4022 MAQAEFCMWALLILVLAHCQLQGAQGVQSISGLGINWGALASHPLPPNIVVNLLKDNGIKKVKLFDADSWTVNALSGTDIEVMVGIPNAQLGKFARSSGDAEDWVKENLTKHFHNGGVNIRYVSVGNEPFLKSYNGSYVGTTLPAMQNIQKAIDKAGIGDKVKVTTALNADVYESPSNKPSDGDFRSDIIDVMKPLLNFLHERSSPFLVNIYPFLSLHQVEGFPEDLAFFDSQSKTIDDKNAQYSNVFDANFDTLAWSLKKAGYPDMKIVIGEIGWPTDGEKNANINNAQRFYQGLLEKMANKKGTPLRPGPMEAYLFSLHDENMKSIEPGNFERHWGIFRYDGKPKFPIDFSGQGQNKWPEAAKGVRYQEHKWCVLSQDVRNFSLVPDALNYACGGADCTSLGFGCSCGNLGLPGNASYAFNQYFQTRDQSVEACDFNGLATIVTEDPSKGSCLFPIEIESSGDKLRAIHTLGGILIGLSLFFITFA* 489
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g0505 488 SUPERFAMILY (Trans)glycosidases 33 352 IPR017853 -
Apr1g0505 488 Pfam X8 domain 373 443 IPR012946 -
Apr1g0505 488 ProSitePatterns Glycosyl hydrolases family 17 signature. 267 280 IPR000490 GO:0004553|GO:0005975
Apr1g0505 488 PANTHER GLUCAN ENDO-1,3-BETA-GLUCOSIDASE-LIKE PROTEIN 6 472 - -
Apr1g0505 488 Gene3D - 369 463 - -
Apr1g0505 488 Pfam Glycosyl hydrolases family 17 33 352 IPR000490 GO:0004553|GO:0005975
Apr1g0505 488 Gene3D Glycosidases 32 359 - -
Apr1g0505 488 PANTHER GLUCAN ENDO-1,3-BETA-GLUCOSIDASE BG1-RELATED-RELATED 6 472 IPR044965 GO:0004553|GO:0005975
Apr1g0505 488 SMART X8_cls 373 456 IPR012946 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr1g0505 Apr-Chr1 6231045 6232791 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr1g0505 30 474 Miscellaneous Gene Families AT5G64790 55.730 0.0 526
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g0505 - - gmx:100794658 789.645
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr9g0130 9 1539590 1543958 Apr1g0505 1 6231045 6232791 PCT