Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g0468 ATGAGAGGAACAATGGGTGCTTCTCCTCATGCTGTTGAAGCTCGACACCGTTTACCTGCATCTATTGAAGATTTATACAAACGAAGACTGCCAAGAAGCAAGGCAAAAGATACAGAGAAGCCTTTCCACATATCTATCCAAGATAAGAGCTCAAGATGCAAGTTTTCTTTCTTAAAACTTATCCTATTGATAACCATATGCGGCACTTTTGGAACGCTATTGTACTCACCTGAGGTTTACAATACCAACCATTTGTCAAGCTCTGGCTCTCGGTGGATATGGGGTGGCTCAGATCCTAGATATACATCGAAGGTAGACATTGATTGGAATGATATAGTGAGAATCACGGAGAAGGTGCCAGGGAAAAATGAACTTCAAGGGATTGGAATTGTGAATTTCAATAAGACAGAAATAGCCCATTGGGAACATCTTATTCCTGATGCTACACATGTTGTTCTGTCCCTTGAGTATGCTGCAAGAAATATGTCATGGGAGTCCTTGTATCCAGAATGGATTGATGAGGAAGAGGAAACTGAGGTTCCTGTTTGTCCTCCTCTACCAAGTCTTAGATCGCCTGGTATAAGACTTAACCTCATTGCTGTCAAGCTTCCTTGTAGGAATCGGGGGAATTGGTCTAGAGATGTTGCTCGTTTGCACTTGCAGCTTGCAGCTGCTGCCCTTGCAACCTCTTTCAAAGGCAATTACCCCGTTTATGTGCTCTTCATTACCAATTGTTTTCCAATTCCAAATCTTTTTACATGCAAAGAACTAGTTGCCCATGAAGGAAATGTGTGGCTATACAAACCAAACTTGAGTGTTTTGAGAGAAAAGGTTCAGCTTCCAGTAGGATCTTGTGAACTTGCCCTTCCCATGAGAGGCAAAGAGCTGGTTTACAATGGAAATGCTCCCAGAGAAGCATATGCAACAATTCTGCATTCAGCTCATGTTTATGTTTGTGGAGCTATAGCTGCTGCGCAAAGCATCCGCATGTCTGGATCAACTCGAGACCTAGTAATCCTTGTTGATGAGACAATCAGTGGGTATCACAAAAGTGGATTGGAAGCAGCAGGGTGGAAGGTTAGAACAATACAAAGGATCAGAAACCCCAAGGCTGAAAAAGATGCTTACAATGAATGGAACTACAGCAAATTCCGGTTGTGGCAGCTGACAGATTATGACAAGATAATTTTCATTGATGCAGATTTGCTCATACTAAGAAATATAGATTTCCTATTTGGAATGCCAGAAATCACTGCCACTGGAAATAATGCCACTCTTTTCAACTCGGGTGTCATGGTGGTTGAGCCATCAAATTGCACATTCCAACTCCTGATGGATCATATTAATGAGATTGAGTCCTACAATGGGGGGGACCAGGGATATTTGAATGAAATATTTACATGGTGGCATAGGATACCAAGACACATGAACTTCTTGAAGCATTTTTGGATTGGTGATGAGGAAGAGAAGAAACAAATGAAGACAATGTTGTTTGGGGCTGAGCCTCCAATTCTATATGTCCTTCACTATCTAGGAGTGAAGCCATGGCTATGCTTCCGAGACTATGATTGTAACTGGAATGCTGATATATTTCATGAGTTTGCTAGTGATGTTGCACATGCAAAGTGGTGGAAGGTGCATGATGCAATGCCTGAGCTATTGCAGCAGTTTTGTTTGTTGAAGTCAAAGCAGAAGGCACAGTTGGAGTGGGATCGTAGGCAAGCTGAAATAGCAAATTACACTGATGGGCATTGGCGAATTAAAGTTAAAGATAGGCGCTTGAAGAAATGTATAGATAATTTGTGCAACTGGAAAAGCATGTTACGGCACTGGGGAGAGACAAATTGGACAGATGATGAGTCTTATACTCCAACACCCCCTGCCATTGCCAAAACATCTCTTTCTGTTTTATAA 1914 0.419 MRGTMGASPHAVEARHRLPASIEDLYKRRLPRSKAKDTEKPFHISIQDKSSRCKFSFLKLILLITICGTFGTLLYSPEVYNTNHLSSSGSRWIWGGSDPRYTSKVDIDWNDIVRITEKVPGKNELQGIGIVNFNKTEIAHWEHLIPDATHVVLSLEYAARNMSWESLYPEWIDEEEETEVPVCPPLPSLRSPGIRLNLIAVKLPCRNRGNWSRDVARLHLQLAAAALATSFKGNYPVYVLFITNCFPIPNLFTCKELVAHEGNVWLYKPNLSVLREKVQLPVGSCELALPMRGKELVYNGNAPREAYATILHSAHVYVCGAIAAAQSIRMSGSTRDLVILVDETISGYHKSGLEAAGWKVRTIQRIRNPKAEKDAYNEWNYSKFRLWQLTDYDKIIFIDADLLILRNIDFLFGMPEITATGNNATLFNSGVMVVEPSNCTFQLLMDHINEIESYNGGDQGYLNEIFTWWHRIPRHMNFLKHFWIGDEEEKKQMKTMLFGAEPPILYVLHYLGVKPWLCFRDYDCNWNADIFHEFASDVAHAKWWKVHDAMPELLQQFCLLKSKQKAQLEWDRRQAEIANYTDGHWRIKVKDRRLKKCIDNLCNWKSMLRHWGETNWTDDESYTPTPPAIAKTSLSVL* 638
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g0468 637 Pfam Glycosyl transferase family 8 311 517 IPR002495 GO:0016757
Apr1g0468 637 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 303 552 IPR029044 -
Apr1g0468 637 PANTHER GLYCOGENIN SUBFAMILY MEMBER 20 614 - -
Apr1g0468 637 PANTHER UDP-GLUCURONATE:XYLAN ALPHA-GLUCURONOSYLTRANSFERASE 1 20 614 - -
Apr1g0468 637 CDD GT8_Glycogenin 305 550 - -
Apr1g0468 637 SUPERFAMILY Nucleotide-diphospho-sugar transferases 304 550 IPR029044 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr1g0468 Apr-Chr1 5772168 5778624 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr1g0468 13 637 Glycosyltransferase AT3G18660 67.134 0.0 882
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g0468 K20890 - gmx:100809361 1229.16
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr1g0468 1 5772168 5778624 Apr1g0468 1 5772168 5778624 ECH
Apr2g1011 2 16410387 16417769 Apr1g0468 1 5772168 5778624 PCT