LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Apr1g0112	ATGGTTACTTCGGAAGGGGAAATGGAATCCACGAGTGGCGATTTGAGCAGTCCACGTGGCTGCCTGAGAGCACAGTTGAAGAAGCCTGGCGATCAGAGGTTTCGCCACGTGGCCGAACGTAGAACGGCTGGTCCACATACTTTGATTTCTCCAACAGCTAACACCTATCGGTTTGAGGGTATGGCCCTCTCAGTCTCAGTCTCAGTAGCCTTTACCTTTACCTTTGTACCATTAATTTTCCTAACTCTGTTCCACGCCAATGCCCAGTTATCTGAGCCACCATTCGCTTGCGATTGGTCGAACCCATCCTCCAGATCCTACCCCTTCTGCAACCCAAAGCTTCCAATCTCTCAACGCACCAAAGACCTTGTTTCTAGACTCACATTGGATGAAAAACTCTCCCAACTCGTTAACACAGCCCCTCCCATTCCGCGACTGGGTATTCCCGGTTACCAATGGTGGAGTGAAGCACTGCATGGCGTTGGAAACGTTGGTCGTGGCATTCGCTTCAATGGCACCATCTCCTCTGCCACTAGCTTCCCTCAAGTTATCCTCACTGCAGCCACCTTTGACTCCCACCTCTGGTACCAAATCGCCCAGGCAATTGGAGTTGAAGCGAGGGCTATCTACAATGCTGGGCAAGCTATGGGAATGACATTTTGGGCTCCGAATATTAACATATTTAGAGACCCCAGATGGGGGAGAGGACAAGAAACAGCTGGCGAAGACCCATTAGTGTCTTCTCACTATGCAGTTTCCTATGTCAGAGGCCTTCAAGGAGATTCCTTCAAAGGAGGAAAATTCAGGGGTCATCTTCAAGCTTCTGCTTGTTGCAAGCATTTCACGGCTTATGATTTGGACAATTGGAAGGGCGTCGATCGCTTTGTTTTCGATGCTCGCGTTACTTTGCAAGATTTAGAGGACACATATCAACCTCCATTTCAGAGTTGTGTACAGCAAGGACGAGCCAGTGGGATAATGTGTGCTTACAACCGCGTCAATGGGGTTCCAAACTGTGCGGATTTCAATCTCTTAACCAAAACCGCCAGAAAACAATGGGGTTTCCATGGGTATATTACGTCGGATTGTGGAGCAGTGGGGATCATACATGACAAGCAAGGGTATGCAAAATCACCAGAGGATGCTGTAGCTGATGTTCTTCGGGCTGGGATGGATTTGGAATGTGGTTCTTATTTGACAGACCATGCAAAATCAGCAGTGCTGCAGAAAAAATTACCTATATCTGGAATAGACCGTGCTCTTCACAATCTGTTTTCCATTAGAATGAGGCTAGGCCTGTTTGGAGGAAATCCAACCAAGCTCTCATTTGGCATGATTGGTCCCAATCATGTGTGTTCCAAAGAGCACCAATATCTAGCTCTTGAAGCTGCAAGAAATGGCATTGTCCTCTTAAAGAACTCTGCAGCACTTCTCCCACTTCCAAAAACAAGCCCCACTACTTCCTTAGCGGTGATAGGTCCCAATGCCAATGCTTCTCCGCTAACTCTTCTAGGAAACTATGCTGGCCCTCCTTGTAAATATGTCACAATATTACAAGGGTTTCAGCACTATGTTAAGAATGCGGTTTATCACCCTGGCTGTGATGGTGGACCAAAGTGCTCTTCAGCTCAAATAGACCAGGCAGTTGAAGTTGCAAAAAAAGTTGATTATGTGGTGCTAGTTATGGGGTTGGATCAAAGCGAAGAGAGGGAAGAACGTGATCGTGTTCACCTTGACTTGCCAGGCAAGCAACTGGAACTCATCAATAGTGTTGCCAAAGCCTCTAAGAGACCAGTTATTTTGGTGATCCTTAGTGGAGGGCCAATAGATATCAGTTCTGCCAAATATGACCCCAAAGTTGGAGGCATCCTCTGGGCCGGTTACCCCGGGGAACTTGGAGGCGTTGCACTTGCACAGATTATCTTTGGTGACCACAATCCAGGAGGAAGATTACCAATGACTTGGTACCCAAAAGATTATATCAAAGTACCAATGACAGACATGAGGATGCGAGCTGATCCTTCAACCGGTTACCCTGGGAGAACTTACCGATTTTACGAGGGTCCAAAGGTGTATGAATTTGGCTATGGACTAAGCTACTCAAAGTATTCCTATGAGTTTGTTTCTGTGACACATGACAAGCTTCACTTTAACCAATCATTCACTTATATGATGGTCGAAAATTCAGAAAACATCAGATACAAATTAGTTTCAGAGTTGGGTGAAGAAACCTGCCAAAGCATGTCAGTCTCAGTCACGGTGAGAGTTGAAAATCATGGAAGCATGGTGGGGAAGCATCCTGTGTTGCTATTTATGAAACCAAGAAAACATAGAACTGGAAGTCCCGTGAAACAGTTGGTGGGTTTCCAGAGCGTATTGCTAGATGCTGGGGAGAAAAACCATGCCAGATTTGAGCTAAGTCCTTGTGAGCATCTTAGTAGAGCAAATGAGGCTGGTGCTAAGGTAATAGAAGAAGGGTCTCATTTGTTGCTCGTGGGTGATCAAGAATACCCAATGGATATCATTATCTGA	2532	0.4625	MVTSEGEMESTSGDLSSPRGCLRAQLKKPGDQRFRHVAERRTAGPHTLISPTANTYRFEGMALSVSVSVAFTFTFVPLIFLTLFHANAQLSEPPFACDWSNPSSRSYPFCNPKLPISQRTKDLVSRLTLDEKLSQLVNTAPPIPRLGIPGYQWWSEALHGVGNVGRGIRFNGTISSATSFPQVILTAATFDSHLWYQIAQAIGVEARAIYNAGQAMGMTFWAPNINIFRDPRWGRGQETAGEDPLVSSHYAVSYVRGLQGDSFKGGKFRGHLQASACCKHFTAYDLDNWKGVDRFVFDARVTLQDLEDTYQPPFQSCVQQGRASGIMCAYNRVNGVPNCADFNLLTKTARKQWGFHGYITSDCGAVGIIHDKQGYAKSPEDAVADVLRAGMDLECGSYLTDHAKSAVLQKKLPISGIDRALHNLFSIRMRLGLFGGNPTKLSFGMIGPNHVCSKEHQYLALEAARNGIVLLKNSAALLPLPKTSPTTSLAVIGPNANASPLTLLGNYAGPPCKYVTILQGFQHYVKNAVYHPGCDGGPKCSSAQIDQAVEVAKKVDYVVLVMGLDQSEEREERDRVHLDLPGKQLELINSVAKASKRPVILVILSGGPIDISSAKYDPKVGGILWAGYPGELGGVALAQIIFGDHNPGGRLPMTWYPKDYIKVPMTDMRMRADPSTGYPGRTYRFYEGPKVYEFGYGLSYSKYSYEFVSVTHDKLHFNQSFTYMMVENSENIRYKLVSELGEETCQSMSVSVTVRVENHGSMVGKHPVLLFMKPRKHRTGSPVKQLVGFQSVLLDAGEKNHARFELSPCEHLSRANEAGAKVIEEGSHLLLVGDQEYPMDIII*	844

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Apr1g0112	843	PANTHER	GLYCOSIDE HYDROLASE FAMILY 3 PROTEIN	66	842	-	-
	Apr1g0112	843	SUPERFAMILY	(Trans)glycosidases	107	466	IPR017853	-
	Apr1g0112	843	PANTHER	SUGAR HYDROLASE-RELATED	66	842	IPR044993	GO:0009044\|GO:0045493
	Apr1g0112	843	PRINTS	Glycosyl hydrolase family 3 signature	180	199	IPR001764	GO:0004553\|GO:0005975
	Apr1g0112	843	PRINTS	Glycosyl hydrolase family 3 signature	274	290	IPR001764	GO:0004553\|GO:0005975
	Apr1g0112	843	PRINTS	Glycosyl hydrolase family 3 signature	348	366	IPR001764	GO:0004553\|GO:0005975
	Apr1g0112	843	Pfam	Fibronectin type III-like domain	768	835	IPR026891	-
	Apr1g0112	843	Gene3D	-	453	701	IPR036881	GO:0004553\|GO:0005975
	Apr1g0112	843	MobiDBLite	consensus disorder prediction	1	18	-	-
	Apr1g0112	843	SMART	Fn3_like_2	766	836	IPR026891	-
	Apr1g0112	843	Pfam	Glycosyl hydrolase family 3 C-terminal domain	468	700	IPR002772	GO:0004553\|GO:0005975
	Apr1g0112	843	Gene3D	-	119	442	IPR036962	GO:0004553\|GO:0005975
	Apr1g0112	843	SUPERFAMILY	Beta-D-glucan exohydrolase, C-terminal domain	468	703	IPR036881	GO:0004553\|GO:0005975
	Apr1g0112	843	Gene3D	Immunoglobulins	729	840	IPR013783	-
	Apr1g0112	843	MobiDBLite	consensus disorder prediction	1	21	-	-
	Apr1g0112	843	Pfam	Glycosyl hydrolase family 3 N terminal domain	173	422	IPR001764	GO:0004553\|GO:0005975

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Apr1g0112	Apr-Chr1	1246784	1255581	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Apr1g0112	93	843	Glycoside Hydrolase	AT1G78060	65.741	0.0	1028

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Apr1g0112	-		-	aprc:113867121	1720.29

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Apr1g0112	1	1246784	1255581	Apr1g0112	1	1246784	1255581	ECH
	Apr9g0917	9	17611564	17618023	Apr1g0112	1	1246784	1255581	PCT