Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g0089 ATGGCCATGTGTAGGTGTTTCTCTATTTTGGTTGGAAGGAAGGAGAAAAACAAGGGTACTGAACGATCTTCAACAGTGGGCCTTAAAACTCGACTTGATCAACCACAGCATCCAAAGGTTTCATCAGATAGTCGTGATTTGAACCCAGGCACCCTTGATATTAAAGTGCCCTGTGGTGTACAGAAGAATTCAAGGTTCAATGCGAGGGTTATGAGTCATGAGAGTCCTGTGAAGGCTGAAGTAGAGGAAGCTTATGAAGGGGAAGATGAGCATGAAGAGTCACCCTCCATCAAGAGGGAGCTCTCTGACCTTGATCTCCAAGCCCACGAAGCTGCTGCAAGCAAAGGAGGATATGATCCAACAGATAAAGAGATAAAATACCCCACTTTATATGAAAACAAGGCCAACATTCAATTGGAAGAGAAAGACAACAAACACAGCAAAGAATGTGTTGATATAATCCAAAGTGGACATGTCAGTGATCCTGGTATTGGCAAGGCTGATTTTTGGGCTTCTCCAAAGCTCAAGCGATCATGCTCTAACCTGGAAAGAAGGGATTTACTCAGGAAGACTTCTCATTACTTTCCATCTTCCAAGTCACAGTCCTTTGAGGATTTGCAGGAATTATCTGCATATCAGATGGTTAACCTAGAAAGCCCCAGGTCTGTGATGACTCACTTCAGTGCTGATAGAGTGATGCTGAGAAGGTATTCATCAAGTCAAGTTCTCCCTTCTGGTAGTAAAAGATTGTGGTGGAAGTTGTTCCTCTGGAGCCACAGGAATATACATAGATCTCGGTTAAGCAAATCAACACAAATATATCCTGCAATTGCTGCTGTAAATAGTCAATGCGGGTACTCTTCAGACACCCTTGAACCAAAACAAGGCAAGGCATTGAAACATGTGGAATCACCCTCACCTGGGTCATCTTTTGGGGAATACTTTCACAAAAGCTGTGATGACAAAAACACAGATAAGAGCAGATTTCAGAAAGAAAATTTTGGTTTTTGGCCACAAAACCAATGGGTAGCTTTCTCAACGGAATCATCCTTTAGCAGAGTGGATGAGTGGGTGAAAGATCTCGAAATTCTGCAGCCACCGCCCGAGGATGATTTTGGTGATGACAATGTTGGAAGCATTGCCTTCCCACCTTCTCCTGTTGCTAATAGATCAATGACTAGAAGCACAGCTCAATTAGTTCGACACCCTGATGCCAATCTTTCAAAGGACATATTGAATGCCAATAGTGTGGTGCAGTCTCTGAACCCAGCCTCAACTGCAGCTCATATATCGGGTATTGGTGTAAAAGCCATCCCTGCTCTTCAACACTTCAACAGTCTCCGCTCTGTGAATTTGTCAAGCAATCTCATAGTTTACATCACACCTGGTTTGCTCCCAAAGGGTATTCATACACTGAATTTGTCAAGAAACAAAATCAGCACCATTGAGGGCCTTAGAGAATTAACCCGCTTGCGTGTACTTGACTTGAGTTATAATCGCATTTCAAGAATTGGACAAGGGTTATCAAATTGTACCTTAATCAAAGAGCTATATCTTGCGGGAAACAAGATAAGTGATGTGGAGGGGCTACACAGGTTATTGAAGCTAGCAGTTCTGGACTTAAGCTTCAACAAGATCACAACAACAAAAGCGTTAGGCCAGCTAGTGGCCAACTACAACTCACTTCAGGCCCTGAATCTTCTTGGAAATGCAATTCAAAGCAACATCAGTGATGACCAGCTACGCAAAGCAGCTTGTGGTCTGCTTCCAAAGCTTGTGTACCTGAACAAGCAATCCATCAAGCCTCAAAGAGCACGAGAAATACTCACTGATAGTGTTGCTAAGGCTGCACTTGGGAACAGTGGGCGGAGCTCCTTCAAAAGAGCACCGAAAAAAGGTGGCCAAGGAGGGTCAAGTTCCTCCAGTGTACATAGAAGCAGTGCTAGTGTTGCCCAGAAAAGTAGTAACAGGTCAAGGAGCCGAACTAAACATCATTAG 1998 0.4369 MAMCRCFSILVGRKEKNKGTERSSTVGLKTRLDQPQHPKVSSDSRDLNPGTLDIKVPCGVQKNSRFNARVMSHESPVKAEVEEAYEGEDEHEESPSIKRELSDLDLQAHEAAASKGGYDPTDKEIKYPTLYENKANIQLEEKDNKHSKECVDIIQSGHVSDPGIGKADFWASPKLKRSCSNLERRDLLRKTSHYFPSSKSQSFEDLQELSAYQMVNLESPRSVMTHFSADRVMLRRYSSSQVLPSGSKRLWWKLFLWSHRNIHRSRLSKSTQIYPAIAAVNSQCGYSSDTLEPKQGKALKHVESPSPGSSFGEYFHKSCDDKNTDKSRFQKENFGFWPQNQWVAFSTESSFSRVDEWVKDLEILQPPPEDDFGDDNVGSIAFPPSPVANRSMTRSTAQLVRHPDANLSKDILNANSVVQSLNPASTAAHISGIGVKAIPALQHFNSLRSVNLSSNLIVYITPGLLPKGIHTLNLSRNKISTIEGLRELTRLRVLDLSYNRISRIGQGLSNCTLIKELYLAGNKISDVEGLHRLLKLAVLDLSFNKITTTKALGQLVANYNSLQALNLLGNAIQSNISDDQLRKAACGLLPKLVYLNKQSIKPQRAREILTDSVAKAALGNSGRSSFKRAPKKGGQGGSSSSSVHRSSASVAQKSSNRSRSRTKHH* 666
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g0089 665 MobiDBLite consensus disorder prediction 73 97 - -
Apr1g0089 665 SUPERFAMILY Outer arm dynein light chain 1 439 600 - -
Apr1g0089 665 SMART LRR_typ_2 444 467 IPR003591 -
Apr1g0089 665 SMART LRR_typ_2 533 555 IPR003591 -
Apr1g0089 665 SMART LRR_typ_2 488 511 IPR003591 -
Apr1g0089 665 ProSiteProfiles Leucine-rich repeat profile. 490 512 IPR001611 GO:0005515
Apr1g0089 665 MobiDBLite consensus disorder prediction 16 54 - -
Apr1g0089 665 MobiDBLite consensus disorder prediction 23 48 - -
Apr1g0089 665 Pfam Leucine rich repeat 446 501 IPR001611 GO:0005515
Apr1g0089 665 MobiDBLite consensus disorder prediction 634 656 - -
Apr1g0089 665 MobiDBLite consensus disorder prediction 620 665 - -
Apr1g0089 665 ProSiteProfiles Leucine-rich repeat profile. 535 556 IPR001611 GO:0005515
Apr1g0089 665 PANTHER NISCHARIN RELATED 4 664 - -
Apr1g0089 665 ProSiteProfiles Leucine-rich repeat profile. 468 489 IPR001611 GO:0005515
Apr1g0089 665 PANTHER OUTER ARM DYNEIN LIGHT CHAIN 1 PROTEIN 4 664 - -
Apr1g0089 665 ProSiteProfiles Leucine-rich repeat profile. 513 534 IPR001611 GO:0005515
Apr1g0089 665 SMART LRR_sd22_2 511 532 - -
Apr1g0089 665 SMART LRR_sd22_2 466 487 - -
Apr1g0089 665 SMART LRR_sd22_2 533 554 - -
Apr1g0089 665 SMART LRR_sd22_2 488 510 - -
Apr1g0089 665 Gene3D Ribonuclease Inhibitor 390 597 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr1g0089 Apr-Chr1 988490 992324 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr1g0089 439 565 Receptor kinase-like Gene Family AT4G08850 34.058 2.28e-06 49.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g0089 - - gmx:100810094 1043.88
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr1g0089 1 988490 992324 Apr1g0089 1 988490 992324 ECH
Apr9g0937 9 18011995 18015445 Apr1g0089 1 988490 992324 PCT