Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr10g2240 ATGAAGTGTTTCTCCTTATCCTTGCTCTCTCTTTGTGTTCTCCTTTGTCTCTGTTTTAAGAGTGTGTCATCTAAAAATGTATCTGAGAGTGACCTACAGCAAGCTAGCATCCCACCAAGAGGTTGGAACTCTTATGATTCCTTTTCCTGGATAATTTCTGAAGAAGAATTCCTACAGAATGCTGAAATAGTTTCTCAGCGTCTCCATGATCATGGATATGAGTTTGTTGTGGTGGATTACCTCTGGTATAGAAGGAAAGTTGAGGGTGCTTATCATGATTCTCTTGGATTTGATGTGATTGATGAATGGGGGAGGATGCTTCCTGATCCAGGAAGGTGGCCTTCTTCAAAAAATGGGAAAGGGTTTACCGAAGTAGCTAATCAAGTACATAGCATGGGTTTAAAGTTTGGGATTCATGTTATGAGAGGCATAAGCACACAGGCTGTCATTGCAAACACCCCTATCCTAGATACAACAACGGGAGGTGCTTATCAAGAATCTGGTCAGGTGTGGCATGCAAAAGACATAGCAATCCCAGAAAGGGCCTGTGCATGGATGCCTCATGGTTTTATGAGTGTAAATACAAAGTTGGGAGCTGGGAAGGCTTTTTTGAGGTCCCTTTATGAGCAGTATGCTGCATGGGGTGTTGACTTGGTGAAACATGATTGTGTATTTGGAGATGACTTGGATTTAAATGAGATAAGCTATGTGTCAGAGGTTCTCAAGGAGCTTGACCGCTCCATTGTATATTCTTTGTCTCCTGGAACCAGTGTGACACCAGCCATGGCCAAGGATGTCAGTGGACTGGTCAATATGTATCGTATAACAGGCGATGACTGGGATTCATGGTGGGATGTTAAAGCTCATTTTGATGTAACCAGGGATTTTTCAACTGCTAATATGATAGGAGCAGAAGGTTTAAACGGGAACTCCTGGCCTGATTTGGACATGTTACCATTTGGATGGCTAACTGATGCTGGTTCAAATGAAGGGCCACATAGGTATAGTCATCTCAATCTAGACGAGAAGAAGACACAGATGACTCTCTGGTCTATGGCAAAGTCTCCCCTTATGTATGGGGGAGATGTTCGGAAGCTTGATTCTACCATATATGATATTATCACAAATCCTACCCTTCTGGAGATTAACTCTTTTAGCTCAAATAATATGGAGTTTCCTTATATCACAAGTCTGAATAGCAAAGATCAGGATCTTGAAGGACAAATGAGAAGAAGCAGCAAGGAAATGAAACCAATGTATACAAATTCGTTAGGCCTCACTAGCTGCTCTGAGTCAAAGGCAAGTGGTTGGACTAGTAAAACTCCCAATCAAGATCTTGAAAGAATATGTTGGAAAAGGAGTTTAGGAAAGAAGTATCTTGCCCCTTTCTGTGTTCACAAGAGAGAACTTCACTTCACATTAGATGAAGAGAATATGTATCAAGAGTATCATCAGGAGAAGTATCATTTAGTAGCAACCAACAGAATTAAATTTTGCCTGGATGCTTCTCCGAAACGCAGGCTTACATCTAAAGAGTTCAAGAGGGGTACATTTTCTCCTTGCAGGTGGGACTCAAATCAGATGTGGCAGCTGCATCCTAATTGGACGCTGGTGAACAGTTATTCTGGCTTGTGTGCAACAATAGAGTCTATCAAAGATGCCAGCAGTTCTGGTGGTTTTCGGTCTTGGATTGCAACGGGAAGAAAAGGAGAAGTCTATGTTGCTTTCTTCAATCTAAGCGAACAGAAGACGGTGATATCTGCGCAGATGTCAGACCTGGCTAAGGTTCTTCCAGGCAGAGACTTCAGTTCTTGTGAGGGCAGTGAATTATGGAGTGAAGATGACACTGAAATAATACAAGGAACATTGTCAGCGTCAGTGGAAATGCATGGAAGTGCACTATTTGTTCTGAATTGCAACTAG 1923 0.4212 MKCFSLSLLSLCVLLCLCFKSVSSKNVSESDLQQASIPPRGWNSYDSFSWIISEEEFLQNAEIVSQRLHDHGYEFVVVDYLWYRRKVEGAYHDSLGFDVIDEWGRMLPDPGRWPSSKNGKGFTEVANQVHSMGLKFGIHVMRGISTQAVIANTPILDTTTGGAYQESGQVWHAKDIAIPERACAWMPHGFMSVNTKLGAGKAFLRSLYEQYAAWGVDLVKHDCVFGDDLDLNEISYVSEVLKELDRSIVYSLSPGTSVTPAMAKDVSGLVNMYRITGDDWDSWWDVKAHFDVTRDFSTANMIGAEGLNGNSWPDLDMLPFGWLTDAGSNEGPHRYSHLNLDEKKTQMTLWSMAKSPLMYGGDVRKLDSTIYDIITNPTLLEINSFSSNNMEFPYITSLNSKDQDLEGQMRRSSKEMKPMYTNSLGLTSCSESKASGWTSKTPNQDLERICWKRSLGKKYLAPFCVHKRELHFTLDEENMYQEYHQEKYHLVATNRIKFCLDASPKRRLTSKEFKRGTFSPCRWDSNQMWQLHPNWTLVNSYSGLCATIESIKDASSSGGFRSWIATGRKGEVYVAFFNLSEQKTVISAQMSDLAKVLPGRDFSSCEGSELWSEDDTEIIQGTLSASVEMHGSALFVLNCN* 641
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr10g2240 640 Gene3D - 552 639 IPR013780 -
Apr10g2240 640 PRINTS Glycosyl hydrolase family 27 signature 32 51 IPR002241 GO:0004553|GO:0005975
Apr10g2240 640 PRINTS Glycosyl hydrolase family 27 signature 126 147 IPR002241 GO:0004553|GO:0005975
Apr10g2240 640 PRINTS Glycosyl hydrolase family 27 signature 341 362 IPR002241 GO:0004553|GO:0005975
Apr10g2240 640 CDD GH27 38 383 IPR002241 GO:0004553|GO:0005975
Apr10g2240 640 PANTHER ALPHA-GALACTOSIDASE 3 637 - -
Apr10g2240 640 SUPERFAMILY Ricin B-like lectins 497 552 IPR035992 -
Apr10g2240 640 Pfam Alpha galactosidase C-terminal beta sandwich domain 559 637 IPR041233 -
Apr10g2240 640 SUPERFAMILY (Trans)glycosidases 35 383 IPR017853 -
Apr10g2240 640 Pfam Alpha galactosidase A 51 147 IPR002241 GO:0004553|GO:0005975
Apr10g2240 640 Pfam Alpha galactosidase A 209 383 IPR002241 GO:0004553|GO:0005975
Apr10g2240 640 SUPERFAMILY Glycosyl hydrolase domain 556 638 - -
Apr10g2240 640 Gene3D Aldolase class I 16 385 IPR013785 -
Apr10g2240 640 PANTHER ALPHA-GALACTOSIDASE/ALPHA-N-ACETYLGALACTOSAMINIDASE 3 637 IPR002241 GO:0004553|GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr10g2240 Apr-Chr10 34684203 34689711 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr10g2240 4 469 Glycoside Hydrolase AT3G26380 65.236 0.0 634
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr10g2240 - - gmx:100777954 1137.09
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr8g1274 8 17809512 17815811 Apr10g2240 10 34684203 34689711 PCT