Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr10g2134 ATGGAAAACTCAGAGGAAGGAAGCGAACAACTTTCCTTCTCTCCAAACCCTAACAATGCCAACGCCAATCAAAGCCAAAACGACACCGAAGACGACAACGACATCGACGAAGAGGAAGAAGAAGAAGAAGACGATGACGTTTCGCCGGAGCCGAATCAGCAAAACCCCCAATCCCCATTGTCGCGGTTGCTCGAGCAGCGGTCCAAGGTGGAAACCGTGTTCCGGCGATTGTCGTCGGAGCTAGTTCCTATTCGAGTCCACGACGTCCTGATTCACGGCAACACGAAGACCAAGGATTGGGTGATCCAAGCAGAGCTCAAGGTCGTCGAGAATGCCACCACCATGCAAGAGCTCATTAGCGCCTCCGAAATCGCCCTTGCTAGGCTTCAGAGCCTTGAGATTTTCGATTCCAGCAAGCTCACGCTCAAGGCAGGGCCGCCGGAGTTGCCGCACACCGCCAATGTCATCGTCAACGTCGTTGAGACCGCTAAAAAAATCTCCGGTGAATTCAGTGTTTATACGAAACCCTCGACTAGTGCTTGGACTGCTGAAGGTGCTCTTAAGTACAAAAACTTGTTAGGTTATGGTGATCTGTGGGATGCCTCTTTGGCCTATGGTGCCAACCAAGCAACGGAGGTGAGTGTAGGGGTGTATGCCCCTCACCTTAAAGGATTGTTGACACCTCTTGTAGCACGACTATCCATGCTTTCCCAAGATTGGCAAGAGTTTTCTTCATACAAAGAGCAATTGTTGGGCATGTCTCTTGGCTTAATCTCAACAAAGCACCATGACTTAGTATACACTCTTGGATGGCGTACCTTGACTGATCCATCACAATTGTCATCCAGGTCTATAAGGAGGCAGCTTGGGCATGGTTTGCTATCCTCTTTGAAGTATACGTTCAAAATTGACAGGAGAAACTCACCAATTAGGCCAACAAAAGGATATGCTTTTCTTTCTACCACTCACGTTGGTGGTCTTACGCCAGATCATCGGAGCTTGCGGTTTTTGCGTCAGGAGTTTGATGTTCGCTGTGCTGTTCCCTTTGGGTTTTATAATACAGCTCTTAACCTTGGGATTTCTGCTGGTGCTGTTTTTCCATGGGGGCATGGTTTCATGAACAAGCCATCTCCTCTTCCTGAAAGGTTTTATTTGGGTGGTGATTTCTCTCCAGTTTGCACCATGGGGGGACCTATAACATTGTGGGGATTTAAAACTAGAGGATTAGGTCCTACTGAACCTCGAAGGCGAAGCAGAGATGAAATTATTGACAATGATGATTCCTCTAGATGGGACTTCGTTGGTGGAGATCTTGCTGTTACTGCTTTTGCCGACTTCTCTTTTGATCTTCCTGTTAGGTGGTTGAGAAAACATGGAATCCATGGCCATGTTTTTGCTGGTGCTGGGAATACTGCTAAATTAACTCAGTATGAGTTTAAGCATTTTTCACCTCGGAAGTTCTTAGAATCCTTTCGAACATCAGTGGGATGTGGATTTGTTGTTCCTACTAGACTTTTCCGCCTAGAGGGTAACTTCTACTACGTACTCAGGCAAGCTGAACATGATCGTGGAAAAACTGGATTTAGGTTCAGCTTCTCAGCACCTTCTTAG 1611 0.4705 MENSEEGSEQLSFSPNPNNANANQSQNDTEDDNDIDEEEEEEEDDDVSPEPNQQNPQSPLSRLLEQRSKVETVFRRLSSELVPIRVHDVLIHGNTKTKDWVIQAELKVVENATTMQELISASEIALARLQSLEIFDSSKLTLKAGPPELPHTANVIVNVVETAKKISGEFSVYTKPSTSAWTAEGALKYKNLLGYGDLWDASLAYGANQATEVSVGVYAPHLKGLLTPLVARLSMLSQDWQEFSSYKEQLLGMSLGLISTKHHDLVYTLGWRTLTDPSQLSSRSIRRQLGHGLLSSLKYTFKIDRRNSPIRPTKGYAFLSTTHVGGLTPDHRSLRFLRQEFDVRCAVPFGFYNTALNLGISAGAVFPWGHGFMNKPSPLPERFYLGGDFSPVCTMGGPITLWGFKTRGLGPTEPRRRSRDEIIDNDDSSRWDFVGGDLAVTAFADFSFDLPVRWLRKHGIHGHVFAGAGNTAKLTQYEFKHFSPRKFLESFRTSVGCGFVVPTRLFRLEGNFYYVLRQAEHDRGKTGFRFSFSAPS* 537
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr10g2134 536 Pfam Omp85 superfamily domain 191 533 IPR000184 GO:0019867
Apr10g2134 536 MobiDBLite consensus disorder prediction 50 65 - -
Apr10g2134 536 Gene3D membrane protein fhac: a member of the omp85/tpsb transporter family 175 534 - -
Apr10g2134 536 Gene3D membrane protein fhac 83 162 - -
Apr10g2134 536 MobiDBLite consensus disorder prediction 29 49 - -
Apr10g2134 536 PANTHER SORTING AND ASSEMBLY MACHINERY SAMM50 PROTEIN FAMILY MEMBER 14 534 IPR039910 -
Apr10g2134 536 MobiDBLite consensus disorder prediction 1 65 - -
Apr10g2134 536 PANTHER OUTER MEMBRANE OMP85 FAMILY PROTEIN 14 534 - -
Apr10g2134 536 MobiDBLite consensus disorder prediction 1 28 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr10g2134 Apr-Chr10 33968988 33972374 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr10g2134 K07277 - gmx:100785408 891.723
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr10g2134 10 33968988 33972374 Apr10g2134 10 33968988 33972374 ECH
Apr10g2134 10 33968988 33972374 Apr9g1446 9 24101943 24107542 PCT