Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr10g2049 ATGGACTGTAACAGATGGGGTTTGAATGGAATGACCGCACTTGTGACTGGTGGCACTCGTGGGATCGGGCATGCCATAGTGAATGATCTAGCTGGGTTTGGTGCTGCTGTGCACACTTGTTCAAGGACCCAAACAGAACTTAACAAGTGCTTGCAAGAATGGCAAAGTCAAGGCTTTCGGGTTACTGGGTCTGTCTGTGATGTGTCATCTCCATCACAGAGAGAGAAGCTCATTCAGGATGTGGCATCCACTTTCAATGGCAACCTTAATATATTTGTCAACAATGTTGGAACAACCGTAAGAAAGCCAACCATTGAGTACACTGCTGAAGAATATTCAGAGCTGATGAGAGTTAATTTAGACTCTGCATTTCATCTGTGCCAACTTGCATATCCTCTTCTCAAAGCCTCTGGAAAGGGAAGCATTGTGTTCATTTCATCTGTTGCTGGTGTTATGAGCTTAGGTACTGGATCTGTCTATGCAGTAAGTAAAGCTGCAATTAATCAGTTCACAAAAAATCTGGCTTGTGAATGGGCAAAAGACAACATAAGGAGCAATTGTGTTGTGCCATGGGCAACCAGAACCCCACTTGTTGAACATTTGCTCCAAAACCAAAAGTTTGTGGATGATGCTATGGCTCGAACTCCTCTGAAGCGCATTGCAGAACCTGAAGAAGTGTCATCCTTGGTGACTTTCCTTTGTCTGCCTGCTGCTTCGTACATCACAGGACAAGTTATTTGTGTTGATGGAGGATTAACTGTGAATGGATTTCAACCCAGCATGAGAATTACTTGA 795 0.439 MDCNRWGLNGMTALVTGGTRGIGHAIVNDLAGFGAAVHTCSRTQTELNKCLQEWQSQGFRVTGSVCDVSSPSQREKLIQDVASTFNGNLNIFVNNVGTTVRKPTIEYTAEEYSELMRVNLDSAFHLCQLAYPLLKASGKGSIVFISSVAGVMSLGTGSVYAVSKAAINQFTKNLACEWAKDNIRSNCVVPWATRTPLVEHLLQNQKFVDDAMARTPLKRIAEPEEVSSLVTFLCLPAASYITGQVICVDGGLTVNGFQPSMRIT* 265
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr10g2049 264 PANTHER NAD(P)-BINDING ROSSMANN-FOLD PROTEIN 4 261 - -
Apr10g2049 264 Gene3D - 2 256 - -
Apr10g2049 264 PRINTS Glucose/ribitol dehydrogenase family signature 12 29 IPR002347 -
Apr10g2049 264 PRINTS Glucose/ribitol dehydrogenase family signature 87 98 IPR002347 -
Apr10g2049 264 PRINTS Glucose/ribitol dehydrogenase family signature 134 150 IPR002347 -
Apr10g2049 264 PRINTS Glucose/ribitol dehydrogenase family signature 160 179 IPR002347 -
Apr10g2049 264 PRINTS Glucose/ribitol dehydrogenase family signature 181 198 IPR002347 -
Apr10g2049 264 PRINTS Glucose/ribitol dehydrogenase family signature 216 236 IPR002347 -
Apr10g2049 264 PANTHER TROPINONE REDUCTASE 4 261 IPR045000 GO:0016491
Apr10g2049 264 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 10 255 IPR036291 -
Apr10g2049 264 Pfam Enoyl-(Acyl carrier protein) reductase 19 253 - -
Apr10g2049 264 ProSitePatterns Short-chain dehydrogenases/reductases family signature. 147 175 IPR020904 GO:0016491
Apr10g2049 264 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 87 98 IPR002347 -
Apr10g2049 264 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 140 148 IPR002347 -
Apr10g2049 264 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 160 179 IPR002347 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr10g2049 Apr-Chr10 33297293 33303772 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr10g2049 1 259 Miscellaneous Gene Families AT2G29290 62.835 6.54e-121 344
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr10g2049 K08081 - gmx:100791265 473.011
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr4g1931 4 27430447 27432442 Apr10g2049 10 33297293 33303772 ECH
Apr10g2049 10 33297293 33303772 Apr10g2049 10 33297293 33303772 ECH