Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr10g2011 ATGGATTCTCTTGATGTCAACACCATGGGTTCCGCCATTGTCTCTGTGAAATCTCCTCCATCTTCACCCCAAACAACCCTTTCCATCTCAATTCCAACACCTCCTGCTTCTGGTCCTAATTTGCCTGAGCATCTGGCGTACAAGAAGCAATTGCGAGCATTTGCTCTAAGGTCAAATATGGTAGCTCCCATGTATCAAACCATTAAGGAGGGGCCTCAACATGCTTCAAACTTTAGGTCAACAGTGTGGGTTGGTGGGATGAGTTTCAGTTCCTCTGCCACTTTCTCTAAACAAAAACGTGCCGAGAATGATGCTGCTGGAGTTGCTCTGAAGGAACTAATTGAAAAATTTAGAGATGAAGATCGCCCTGTTGTGTATGAGAATATTTTCTTTTCCAAATTGATCTTGAATGAATATGCTAGCAAGCTGAAAGTGGAACCACCTACATTCAACACTATTAAGCTTGAAGGGTCCCTTCCTCTTTTCATATCAACTTTGGTTTTCAAGGGTACAAATTACACCGGCGAAGCTGCTAGAAATAAAAGAGAGGCTGAGCAGTTAGCAGCACGTGCTGCTATTGTTTCAATTCTTGGTGATTCCAGTTCAGGATTGCTTCGTGACATAGTAAAGTCAAAATCTAGAATTCTTGCTGAAGCCAAACCAAACAAATCCCAACACATAGATGCTCATCCAGTATCAGCCATGGAAAATGCAGGACTTCCCTTTGTTTCACAGCATCATAAGGATAAGGAGGTTTCAAGTCTTGTAGCTGCTAATAATAATGAAACAAATATTGCACTTCATGCACCTCCTCCTACAGTGCTTTCCTTGTTTCCAGAATCTCAAATGTCTGAACATATACCATCCCTTGAAGCTACTGTCACTGAGCTTCCAAATATGAATCTCCATCCAGGTTTAGAACGCCCGGTTGCCCATGTTTCTCACCCAGAATCTCAGATGCCTAACCATAGACTATCCGTTGAAGCCACCATCACTGAGATTCCAAATTTGAATTTCCATCCTGGTTTAGAACAGTCTATTGGCAATGCTTCTGGTTCAAAAAAGAAGCGAAAGAACAAGAAGAAGGCTAAAAAGAGGCCACAATTGGAATCTGTGTAA 1119 0.42 MDSLDVNTMGSAIVSVKSPPSSPQTTLSISIPTPPASGPNLPEHLAYKKQLRAFALRSNMVAPMYQTIKEGPQHASNFRSTVWVGGMSFSSSATFSKQKRAENDAAGVALKELIEKFRDEDRPVVYENIFFSKLILNEYASKLKVEPPTFNTIKLEGSLPLFISTLVFKGTNYTGEAARNKREAEQLAARAAIVSILGDSSSGLLRDIVKSKSRILAEAKPNKSQHIDAHPVSAMENAGLPFVSQHHKDKEVSSLVAANNNETNIALHAPPPTVLSLFPESQMSEHIPSLEATVTELPNMNLHPGLERPVAHVSHPESQMPNHRLSVEATITEIPNLNFHPGLEQSIGNASGSKKKRKNKKKAKKRPQLESV* 373
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr10g2011 372 SUPERFAMILY dsRNA-binding domain-like 132 196 - -
Apr10g2011 372 SUPERFAMILY dsRNA-binding domain-like 39 113 - -
Apr10g2011 372 SMART DRBM_3 132 197 IPR014720 -
Apr10g2011 372 SMART DRBM_3 47 114 IPR014720 -
Apr10g2011 372 MobiDBLite consensus disorder prediction 14 36 - -
Apr10g2011 372 ProSiteProfiles Double stranded RNA-binding domain (dsRBD) profile. 46 115 IPR014720 -
Apr10g2011 372 MobiDBLite consensus disorder prediction 338 372 - -
Apr10g2011 372 Pfam Double-stranded RNA binding motif 47 113 IPR014720 -
Apr10g2011 372 Pfam Double-stranded RNA binding motif 133 193 IPR014720 -
Apr10g2011 372 PANTHER RIBONUCLEASE III 36 364 IPR011907 GO:0003723|GO:0004525|GO:0006364
Apr10g2011 372 PANTHER DOUBLE-STRANDED RNA-BINDING PROTEIN 4 36 364 - -
Apr10g2011 372 Gene3D - 121 199 - -
Apr10g2011 372 Gene3D - 28 119 - -
Apr10g2011 372 MobiDBLite consensus disorder prediction 14 34 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr10g2011 Apr-Chr10 32991666 32994365 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr10g2011 - - aprc:113851259 718.768
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr9g1322 9 22865470 22869954 Apr10g2011 10 32991666 32994365 PCT