Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr10g1702 ATGGGTGTTGGAAATCAAGAGGCAATTAAGCAGTTGCAGTCCCTTATGGAAAATGTGGATGAGCAACAGAAGAACACATTCCAGAATGTGCACCAGGGTTATCCAACTGAAACATTGATACGGTTTCTCAGAGCAAGGGACTGGAATGTTTCCAAAGCCCATAAGATGTTAATTGAGTCTTTGAAGTGGAGAGTGGAGAATGAGATTGACAATATTTTAGCGAAGCCTATCCCTGCGGATTTGTACAGAGCTGTGCGAGATTCTCAACTCATAGGAATGTCTGGTTACTCAAAGGAGGGTCTACCGGTCATTGCTGTTGGTGTTGGGCTCAGTACATATGACAAAGCATCTGACAAATACTATATACAGTCATACATCCAAATGAATGAATATAGGGATCGGGTGATCTTGCCAACAGCTACGAAGAAGCATGGACGATATATTGGCACCTGTGTGAAAGTCTTGGATATGACTGGTTTAAAATTTTCAGCACTGAACCAATTGAGGTTGTTGACTGCTATAGCTACAATAGATGACTTGAACTACCCAGAAAAGACAGACACATACTATATTGTTAATGCACCATATGTATTCTCAGCATGTTGGAAGGTTGTAAAGCCTCTCTTGCAAGAAAGAACAAGGAGGAAAATCCAGGTGCTGCAAGGTTGTGGGAAGGAGGAATTACTGAAGGTAATGGACTATGCATCCCTCCCACACTTCTGCAGAAAAGAAGATTCCAAGTCATCCAAACATAATGCAACAGGAAGCACTGAAAATTGTTTCTCCTTCAATCATGTCTTCCATCAACAACTCTACAATTACGTCAAGCAGCAAGCTATTATAATGGAGTCAATATCACCGCCAATCAGACAAGGCTCCTTCTATGTAGACATACCAGAGCCAGACCCAGATGATACCAAAATAGCCAAAACCATTGAATCTGAATTCCACAAATTGGAAAATCAGAATGGCTTCACCAACTCACTAAATGGTCTTACTGTTAATGGGCATTGA 1014 0.4122 MGVGNQEAIKQLQSLMENVDEQQKNTFQNVHQGYPTETLIRFLRARDWNVSKAHKMLIESLKWRVENEIDNILAKPIPADLYRAVRDSQLIGMSGYSKEGLPVIAVGVGLSTYDKASDKYYIQSYIQMNEYRDRVILPTATKKHGRYIGTCVKVLDMTGLKFSALNQLRLLTAIATIDDLNYPEKTDTYYIVNAPYVFSACWKVVKPLLQERTRRKIQVLQGCGKEELLKVMDYASLPHFCRKEDSKSSKHNATGSTENCFSFNHVFHQQLYNYVKQQAIIMESISPPIRQGSFYVDIPEPDPDDTKIAKTIESEFHKLENQNGFTNSLNGLTVNGH* 338
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr10g1702 337 Pfam CRAL/TRIO, N-terminal domain 8 58 IPR011074 -
Apr10g1702 337 CDD SEC14 82 240 IPR001251 -
Apr10g1702 337 Pfam CRAL/TRIO domain 89 240 IPR001251 -
Apr10g1702 337 Coils Coil 5 25 - -
Apr10g1702 337 PANTHER OS09G0258000 PROTEIN 1 336 - -
Apr10g1702 337 SMART sec14_4 78 246 IPR001251 -
Apr10g1702 337 SUPERFAMILY CRAL/TRIO domain 80 240 IPR036865 -
Apr10g1702 337 SUPERFAMILY CRAL/TRIO N-terminal domain 6 74 IPR036273 -
Apr10g1702 337 SMART CRAL_TRIO_N_2 35 60 IPR011074 -
Apr10g1702 337 Gene3D - 4 278 IPR036865 -
Apr10g1702 337 ProSiteProfiles CRAL-TRIO lipid binding domain profile. 78 249 IPR001251 -
Apr10g1702 337 PANTHER - 1 336 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr10g1702 Apr-Chr10 29889199 29893873 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr10g1702 1 330 Acyl Lipid Metabolism Gene Families AT5G47730 65.861 6.32e-163 456
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr10g1702 - - gmx:100817955 610.527
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr10g1702 10 29889199 29893873 Apr9g1848 9 27236788 27242395 PCT