Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr10g1675 ATGGCCGTTCAAGCTCAATACCCATCCAATGTCCTCTTTCTAAACAGAAACGGGCAAGAAGGGCATGACTATTCATTGCAACCTCAACCCGGAGGAGGTCTCCTGAATCAGTCTCACATGTTATACAACGACAATGGAAGTAATAGTAATAATAATAATAATTGTCGCAAGAGAGGGAGAGAAGAGATTGGACACACAGTAACAACAACAGGCATAGGCTCTAATGTTAATCCATTCTCTTTGCAATCTCAGCCTCCACAGCTTATACACCTCTCTCAACTCCATAATCACCAACAAAATGCTGTCTCCACTGGCCTATGCTTGTCCTTCGATGACCAACAACAACAACAACAACAAACACTACAACTTCATCATCATCAACAACAACATGCCTCTCACTCCTCTGCTTTCCTTTCTCTATTGTCCCAAGGCTTCTCTTCCCAATTCAAACAACAACGATACGAAATTGATCAATTACTTCAAGCTCAGGGAGAGCAACTGCGGCGGACATTGGCAGAGAAGAGGCAAAGGCATTACCGGGCGCTGCTGAGCGCGGCGGAGGAGGCGGTGGCCCGGCGGCTGAGGGAGAAGGAAGCCGAAGTGGAGAAAGCCACCCGCAAGAACGCGGAATTAGAAGCACGCGCGGCCCAGCTGAGCGTGGAGGCGCAGGTGTGGCAGGCCAAGGCCCGAGCCCAAGAGGCGACGGCGGCGTCCCTCCAGGCCCAATTGCAGCAGACCATAATGTGCCACGGCGGCGAGGACGGCGGCGGTGGCGTGTCCTGCGCCGTGGAGGGGCAGGCGGAGGACGCCGAGTCGGCCTACGTTGACCCTGAGCGCGTGGTGGCCGCGGCGGCGCGTCCGAAATGCAGAGGGTGCGGGAAGCGCGTGGCTTCGGTTGTGGTATTTCCGTGTCGGCACTTATGCATCTGTACAGAATGCGATGCGCATTTCCGAGCATGCCCCGTTTGTCTCACCCTTAAGATTAAAACCGTCGAAGTCCTTCTCTCTTAA 1011 0.5371 MAVQAQYPSNVLFLNRNGQEGHDYSLQPQPGGGLLNQSHMLYNDNGSNSNNNNNCRKRGREEIGHTVTTTGIGSNVNPFSLQSQPPQLIHLSQLHNHQQNAVSTGLCLSFDDQQQQQQQTLQLHHHQQQHASHSSAFLSLLSQGFSSQFKQQRYEIDQLLQAQGEQLRRTLAEKRQRHYRALLSAAEEAVARRLREKEAEVEKATRKNAELEARAAQLSVEAQVWQAKARAQEATAASLQAQLQQTIMCHGGEDGGGGVSCAVEGQAEDAESAYVDPERVVAAAARPKCRGCGKRVASVVVFPCRHLCICTECDAHFRACPVCLTLKIKTVEVLLS* 337
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr10g1675 336 PIRSF SBP1_RNase_bind 1 336 IPR017066 -
Apr10g1675 336 PANTHER SBP (S-RIBONUCLEASE BINDING PROTEIN) FAMILY PROTEIN 1 335 IPR017066 -
Apr10g1675 336 Pfam Zinc finger, C3HC4 type (RING finger) 288 324 - -
Apr10g1675 336 ProSiteProfiles Zinc finger RING-type profile. 289 323 IPR001841 -
Apr10g1675 336 Coils Coil 187 228 - -
Apr10g1675 336 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 266 335 IPR013083 -
Apr10g1675 336 PANTHER BOI-RELATED E3 UBIQUITIN-PROTEIN LIGASE 1-LIKE 1 335 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr10g1675 Apr-Chr10 29470510 29479025 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr10g1675 K19042 - gmx:100788924 385.571
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr10g1675 10 29470510 29479025 Apr10g1675 10 29470510 29479025 ECH
Apr7g0750 7 14409649 14416443 Apr10g1675 10 29470510 29479025 PCT