Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr10g1665 ATGTTCGAAGGAGCAAGTAGTGTCTGTGTTCTTCATCGGAAACGAATCAACGAAAAACAGAGGCCAATCCAACACCGTCGCTCTGTCTCCCTCCCTAACAATTCCACCCCCAAACCTCAACACGAGGAATCTGAATCAGATATTGAAGTATCTGATGTTAGTGGTTCTGAAGGGGATGATGCATCTTGGATCTCCTGGTTTTGCAATTTGAGAGGAAATGAATTCTTTTGCCAAGTTGATGATGATTTCGTACAAGATGATTTCAACCTCTGTGGATTAAGTAGTCAAGTGCCTCACTATGATTATGCATTTGATTTAATTTTGGATGTTCAGTCCTCCCATAGTGACATGTTCACAGAGGAACAAAATGAGTTAATTGAATCTGCAGCAGAGATACTTTATGGTCTAATTCATGCTAGGTACATATTGACAAGCAAAGGAATGGCTGCAATGTTGGACAAGTACAAGAACTATGATTTTGGCAGATGTCCAAGTGCTTATTGCTCTGGACAACCCTGCCTTCCAGTCGGTCAATCAGATATTCCTAAGTCAAGTACTGTAAAAATATATTGCCCTAGGTGTGAAGACATTTACTACCCACGGTCCAAGTATCAAGACATTGATGGAGCTTATTTTGGAGCTACATTTCCTCACCTCTTTCTGATGACTTATGGGAATCTGAAGCCACAAAAGTCATCACAGAAATATGTGCCTAGAGTTTTTGGCTTCAAAGTTCACAAGCCCTGA 747 0.4083 MFEGASSVCVLHRKRINEKQRPIQHRRSVSLPNNSTPKPQHEESESDIEVSDVSGSEGDDASWISWFCNLRGNEFFCQVDDDFVQDDFNLCGLSSQVPHYDYAFDLILDVQSSHSDMFTEEQNELIESAAEILYGLIHARYILTSKGMAAMLDKYKNYDFGRCPSAYCSGQPCLPVGQSDIPKSSTVKIYCPRCEDIYYPRSKYQDIDGAYFGATFPHLFLMTYGNLKPQKSSQKYVPRVFGFKVHKP* 249
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr10g1665 248 PRINTS Casein kinase II regulatory subunit family signature 62 78 IPR000704 GO:0005956|GO:0019887
Apr10g1665 248 PRINTS Casein kinase II regulatory subunit family signature 79 93 IPR000704 GO:0005956|GO:0019887
Apr10g1665 248 PRINTS Casein kinase II regulatory subunit family signature 134 155 IPR000704 GO:0005956|GO:0019887
Apr10g1665 248 PRINTS Casein kinase II regulatory subunit family signature 159 180 IPR000704 GO:0005956|GO:0019887
Apr10g1665 248 PRINTS Casein kinase II regulatory subunit family signature 181 202 IPR000704 GO:0005956|GO:0019887
Apr10g1665 248 PRINTS Casein kinase II regulatory subunit family signature 208 225 IPR000704 GO:0005956|GO:0019887
Apr10g1665 248 Gene3D protein kinase ck2 holoenzyme, chain C, domain 1 55 159 IPR016149 GO:0005956|GO:0019887
Apr10g1665 248 SMART CK_II_beta_2 62 244 IPR000704 GO:0005956|GO:0019887
Apr10g1665 248 Gene3D - 160 233 - -
Apr10g1665 248 MobiDBLite consensus disorder prediction 21 56 - -
Apr10g1665 248 Pfam Casein kinase II regulatory subunit 62 244 IPR000704 GO:0005956|GO:0019887
Apr10g1665 248 ProSitePatterns Casein kinase II regulatory subunit signature. 163 194 IPR000704 GO:0005956|GO:0019887
Apr10g1665 248 PANTHER CASEIN KINASE II SUBUNIT BETA 24 248 IPR000704 GO:0005956|GO:0019887
Apr10g1665 248 SUPERFAMILY Casein kinase II beta subunit 60 247 IPR035991 GO:0005956|GO:0019887
Apr10g1665 248 PANTHER CASEIN KINASE II SUBUNIT BETA 24 248 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr10g1665 Apr-Chr10 29369439 29372120 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr10g1665 K03115 - gmx:100789357 393.66
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr10g1665 10 29369439 29372120 Apr10g1665 10 29369439 29372120 ECH
Apr10g1665 10 29369439 29372120 Apr7g0744 7 14326563 14329729 PCT