Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr10g1580 ATGCGAGTCAAGGAAATGCACCCGTTGTGCTGTATCTCTCTCGAAAGTCCCGGGATCGGGAGCGACTCGCCGGAGCCAGATGCCGCGGCGCTGTCCAGAACCAGGAGTCTTCCGGCGGGTGGATCTGACGGCATTGCGCGCCGGGGATCAGAGGCTTCGGTCGCTGGCGTGCTCTACAAGTGGACCAATTACGGCAAGGGATGGAGATCCCGGTGGTTCCTCCTCCGCAATGGCGTCCTCTCTTATGCCAAGATCCGGTGGCCGGAAAACCTCAATCTTCTCTCTCCCGTTGACGAAGTTCGCCTCATCGGAGAAGTCACCGCCACTCGCCTCGCCAGAGACGCCGCCACCACCATGCGCCGGAAGAATCACAAACCTCCTTCGTCTTCCTCATCATCCGCCGTCGTCCATCTCAAGATCTCGTCATTTAGAGAGAGCAAATCAGACGACAGGCGGTTCTATATATTCACAGCAACGAAGACTCTCCATCTGAGAACTGATTCGAGGAAAGACCGTGTGGCGTGGATTCAAGCTTTGGTGTCAACCCGTGGCTTGAATCCTCTTCGACCACTTAGTGATCATCTCTCCCTCGCACCAAATCATATATCTGTATCAACCGAGAGGCTTAAGAAACGCTTGGTTGAAGAGGGTAGCAGTGAGAGCCTTGTCAAGGAGTGCGAGCAAATCATGCTCGCTGAGTTCTCCGAATTACAAGAGCAATTTCAGATCCTATGTCATGAGCGATCCAATTTACTTGATACAATAAGGCAGCTGGAGGCTGCTAATATTGAACCTGAGGCCTCTGCCTTGCATGTTGGCGAATACCAATTAACAAAGAATGAGTTTTCAAGTCTAGGACGTGGAAAATATAGTGAATGCAGTACAACTGAATCATCTGATGATATCGAGAAACAGGAGATGGAGGAAGTGTCAGATGAAGATGAAATCTCGTTTTATGACACTAAAGAGTATTTTACAGAACCGGGTTTTTGGTGTGGCTCAGCAAGACCTTTGGATACTCTGAACATGTCTGGGGAAGCTAACACACAATGCATTGATTTGGAGAATAGCCTTGTTGAGAAGACGATCAATGATTATGGGTACCCTCAGATAGCAAGGCGAAAAAAGCTTCCAAATCCTGTTGAGAAAGAGAAGGGCGTTAGCCTTTGGTCAATTATCAAAGACAATGTGGGCAAAGATCTTACACGAGTTTGTCTTCCTGTATACTTTAATGAACCAATATCATCTCTTCAGAAGTGTTTTGAGGACTTGGAGTACTCTTATCTTCTGGATAGAGCTTATGAGTATGGAAAATCAGGAAACAGTCTCCTTCGGGCGCTGAATGTTGCTGCCTTTGCCGTTTCTGGATATGCATCGTCCGAAGGTCGTCATTGTAAACCCTTTAATCCTTTGCTAGGGGAAACTTACGAAGCTGATTATCCTGACAAAGGAATTCGCTTCTTTTCTGAGAAGGTGAGTCACCATCCAACTGTGGTTGCGTGCCACTGTGAAGGTAGAGGGTGGAAGTTTTGGGCTGACAGCAACATTCGTTCAAAGTTTTGGGGAAGGTCAATTCAGCTTGATCCAGTGGGAGTTTTGACCCTAGAGTTTGATGATGGTGAAATATTTCAGTGGAGTAAGGTCACGACTACAATTTATAATCTTATCCTTGGCAAAATATATTGTGATCATCATGGGAGCATGGACATCCGTGGTAATCGCCAATATTCTTGCACACTCAAGTTCAAAGAACAAACGATTCTTGACCGAAATCCTCACCAGGTGCATGGCTTTGTTGAAGATGTAAAGGGAAAAAAAGTTGCCTCATTATTTGGCAAGTGGGATGACAGCATGTATTATGTTAGTGGTGAGGTGAATGTGAAGCCTAAAGATTTCACTTCGTCAGATGCAACCTTGTTGTGGAAAAGGACTAAGCCACCACTTAATCTCACCCGATACAATTTGACATCATTTGCTATCACGCTGAACGAGCTTACTTCGGGACTACAGGAGAAGCTTCCACCCACGGATTCCAGGCTGAGACCAGATCAGCGGCACCTAGAGAATGGGGAATACGAGAAGGCTAATATGGAGAAACAAAGGTTGGAGAAGAGGCAAAGAATGTCAAGGAAAATACAAGAAAATGGATGGCAGCCTAGGTGGTTCCACAGAGAAGATGGAAACGGAACATTTCGATATATTGGCGGGTATTGGGAAGCGAGAGCTTTGGGAAGATGGGATGGATGCCCAAATATATTTGGTGAATTTCCTGAAGGCAATTTTGATCCTTCAGGTGCATCTTAA 2304 0.4644 MRVKEMHPLCCISLESPGIGSDSPEPDAAALSRTRSLPAGGSDGIARRGSEASVAGVLYKWTNYGKGWRSRWFLLRNGVLSYAKIRWPENLNLLSPVDEVRLIGEVTATRLARDAATTMRRKNHKPPSSSSSSAVVHLKISSFRESKSDDRRFYIFTATKTLHLRTDSRKDRVAWIQALVSTRGLNPLRPLSDHLSLAPNHISVSTERLKKRLVEEGSSESLVKECEQIMLAEFSELQEQFQILCHERSNLLDTIRQLEAANIEPEASALHVGEYQLTKNEFSSLGRGKYSECSTTESSDDIEKQEMEEVSDEDEISFYDTKEYFTEPGFWCGSARPLDTLNMSGEANTQCIDLENSLVEKTINDYGYPQIARRKKLPNPVEKEKGVSLWSIIKDNVGKDLTRVCLPVYFNEPISSLQKCFEDLEYSYLLDRAYEYGKSGNSLLRALNVAAFAVSGYASSEGRHCKPFNPLLGETYEADYPDKGIRFFSEKVSHHPTVVACHCEGRGWKFWADSNIRSKFWGRSIQLDPVGVLTLEFDDGEIFQWSKVTTTIYNLILGKIYCDHHGSMDIRGNRQYSCTLKFKEQTILDRNPHQVHGFVEDVKGKKVASLFGKWDDSMYYVSGEVNVKPKDFTSSDATLLWKRTKPPLNLTRYNLTSFAITLNELTSGLQEKLPPTDSRLRPDQRHLENGEYEKANMEKQRLEKRQRMSRKIQENGWQPRWFHREDGNGTFRYIGGYWEARALGRWDGCPNIFGEFPEGNFDPSGAS* 768
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr10g1580 767 Gene3D - 48 184 IPR011993 -
Apr10g1580 767 Coils Coil 685 705 - -
Apr10g1580 767 Pfam Pleckstrin homology domain 56 179 - -
Apr10g1580 767 SUPERFAMILY PH domain-like 52 181 - -
Apr10g1580 767 SMART PH_update 52 186 IPR001849 -
Apr10g1580 767 Gene3D - 684 740 - -
Apr10g1580 767 ProSiteProfiles PH domain profile. 51 184 IPR001849 -
Apr10g1580 767 SUPERFAMILY Oxysterol-binding protein-like 383 761 IPR037239 -
Apr10g1580 767 Gene3D - 474 646 - -
Apr10g1580 767 Pfam Oxysterol-binding protein 388 741 IPR000648 GO:0008289
Apr10g1580 767 MobiDBLite consensus disorder prediction 15 47 - -
Apr10g1580 767 PANTHER OXYSTEROL-BINDING PROTEIN-RELATED PROTEIN 2A 4 758 - -
Apr10g1580 767 PANTHER OXYSTEROL-BINDING PROTEIN-RELATED 4 758 IPR000648 GO:0008289
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr10g1580 Apr-Chr10 28338388 28348140 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr10g1580 K20456 - gmx:100812205 1430.23
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr10g1580 10 28338388 28348140 Apr10g1580 10 28338388 28348140 ECH
Apr7g0676 7 13569422 13579996 Apr10g1580 10 28338388 28348140 PCT