Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr10g1526 ATGAACGACTCATCCGGTCACCTGAATCTTCCTCCCGCCGCCGCGTCGGGAAACGTGGCGGCGTCTCTCCGACACGTAGACCGCATGATCAACTCCAACCATTACACCTCACCTTCTAGAACAATCTACTCCGACCGGTTCATTCCTAGCAGATCTGCCTCCAAATTTGCTCTCTTCGACATTTCCGCGCCTCCTGAGGGCCGTGACGACACCTCCAGCGCCTACACCACGCTCTTGCGCACCGCCTTGTTCGGAGCCGACGTCGCCGGCGTCGCGCCGCCCCTCACGCCGGAGAAAACGCCTTTGCCGGCAATGATGCTTCCTAGCTGGAATATTTTCCGGTACAAGACCGAGACTCGCCAGTCCATGGACTCGCTTTCGCCGTTTATGAGCGACGATGTGGTTCTTGGCGTTAATCACAGCCCGGTCAAGGCTCCGAGGAAGGTTCCAAGGTCGCCTTTTAAGGTTCTGGATGCACCTGCGCTGCAAGATGATTTCTATCTGAATCTGGTGGATTGGTCTTCGAATAATGTGTTGGCTGTTGGTCTTGGTAACTGTGTTTATCTCTGGAATGCTTGTAGCAGCAAGGTTACTAAATTATGTGACTTGGGGATTGATGACTGCGTTTGTTCAGTTGGTTGGGCTCAGCGTGGTACACACCTTGCTGTTGGAACTAGCAATGGTAAAGTTCAGATTTGGGATGCATCTCGATGCAAGAAGATAAGATCAATGGAGGGTCATCGTTTACGTGTTGGGGCCTTGGCCTGGAGTTCATCTCTTTTGTCTTCTGGTGGCAGGGATAAGAATATTTATCAACGAGATATACGTGCGCAAGAAGATTTTGTTAGTAAACTATCAGGGCACAAATCAGAGGTTTGTGGACTGAAGTGGTCATATGATAATCGTGAGTTGGCATCTGGAGGAAATGACAACAGATTGTTTGTTTGGAATCAACATTCAACTCAGCCTCTTCTGAAGTACTATGAGCATACAGCAGCTGTTAAAGCTATTGCATGGTCTCCTCATCTTCATGGACTTCTTGCATCTGGGGGAGGAACTGCAGATCGATGTATACGTTTCTGGAATACAACCACAAACTCACACTTAAGCTGTATAGACACTGGAAGTCAGGTTTGCAATCTTGTATGGTCAAAAAATGTCAATGAAGTGGTAAGCACACATGGCTACTCCCAGAATCAGATAATTGTTTGGAGATACCCCACCATGTCAAAGTTGGCCACTCTTACTGGCCATACATATAGAGTTCTTTATCTTGCCATTTCTCCAGATGGTCAGACTATTGTTACTGGAGCTGGAGACGAAACCCTAAGGTTCTGGAATGTATTCCCTTCCCCTAAATCACAGAATACTGACAGTGAAATTGGAGCATCATCGCTTGGAAGAACTATTATTAGGTGA 1419 0.4778 MNDSSGHLNLPPAAASGNVAASLRHVDRMINSNHYTSPSRTIYSDRFIPSRSASKFALFDISAPPEGRDDTSSAYTTLLRTALFGADVAGVAPPLTPEKTPLPAMMLPSWNIFRYKTETRQSMDSLSPFMSDDVVLGVNHSPVKAPRKVPRSPFKVLDAPALQDDFYLNLVDWSSNNVLAVGLGNCVYLWNACSSKVTKLCDLGIDDCVCSVGWAQRGTHLAVGTSNGKVQIWDASRCKKIRSMEGHRLRVGALAWSSSLLSSGGRDKNIYQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHSTQPLLKYYEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNSHLSCIDTGSQVCNLVWSKNVNEVVSTHGYSQNQIIVWRYPTMSKLATLTGHTYRVLYLAISPDGQTIVTGAGDETLRFWNVFPSPKSQNTDSEIGASSLGRTIIR* 473
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr10g1526 472 SUPERFAMILY WD40 repeat-like 157 454 IPR036322 GO:0005515
Apr10g1526 472 ProSiteProfiles Trp-Asp (WD) repeats profile. 209 243 IPR001680 GO:0005515
Apr10g1526 472 Gene3D - 143 452 IPR015943 GO:0005515
Apr10g1526 472 ProSiteProfiles Trp-Asp (WD) repeats profile. 415 448 IPR001680 GO:0005515
Apr10g1526 472 PANTHER PROTEIN FIZZY-RELATED 1 7 472 - -
Apr10g1526 472 Pfam Anaphase-promoting complex subunit 4 WD40 domain 205 258 IPR024977 -
Apr10g1526 472 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 415 448 - -
Apr10g1526 472 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 285 317 - -
Apr10g1526 472 PANTHER CELL DIVISION CYCLE 20 CDC20 FIZZY -RELATED 7 472 IPR033010 GO:0010997|GO:0097027|GO:1904668
Apr10g1526 472 SMART WD40_4 237 274 IPR001680 GO:0005515
Apr10g1526 472 SMART WD40_4 320 362 IPR001680 GO:0005515
Apr10g1526 472 SMART WD40_4 150 191 IPR001680 GO:0005515
Apr10g1526 472 SMART WD40_4 194 234 IPR001680 GO:0005515
Apr10g1526 472 SMART WD40_4 278 317 IPR001680 GO:0005515
Apr10g1526 472 SMART WD40_4 408 447 IPR001680 GO:0005515
Apr10g1526 472 Pfam WD domain, G-beta repeat 411 447 IPR001680 GO:0005515
Apr10g1526 472 Pfam WD domain, G-beta repeat 322 362 IPR001680 GO:0005515
Apr10g1526 472 Pfam WD domain, G-beta repeat 282 317 IPR001680 GO:0005515
Apr10g1526 472 ProSitePatterns Trp-Asp (WD) repeats signature. 434 448 IPR019775 -
Apr10g1526 472 ProSiteProfiles Trp-Asp (WD) repeats profile. 285 326 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr10g1526 Apr-Chr10 27714875 27721373 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr10g1526 221 450 Miscellaneous Gene Families AT5G08390 21.459 1.07e-08 55.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr10g1526 K03364 - gmx:100780928 878.626
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr10g1526 10 27714875 27721373 Apr10g1526 10 27714875 27721373 ECH
Apr10g1526 10 27714875 27721373 Apr7g0632 7 13012791 13018168 PCT