Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr10g1242 ATGTTGGAGAAAGTGGAAGAATTTAACATGGACAAAGTAATAGAGAAATTTGAGAGGATTACAAAGGATGCTGAGAGGATTCAGAGGGAAACACTGAGAAGGATTTTGGAAGATAACGCATCATGTGAGTACTTGCAGAATTTGGGACTTAATGGGAGGACAGACCCTGAGAGTTTCAAGGATTGTGTTCCACTTGTCTCACACATAGAATTGGAACCTTATATCAACAGAATACTTGATGGTGATGATTCTCCTATTCTCACTTCCAAACCCATCACAGCCATGTCTCTGAGTTCTGGCACTACTCAAGGAAAGCCAAAATACGTACCGTGGAATGATGAGTTGTTTGAAACCACTGTGCAGATATATCACACCTCTTTTGCCTTTAGGAACAGAGAATTTCCTACAAAGAATGGCAAGGCTTTGAGCTTTAATTACAGCAGCAAGCAGTTCAAAACCAAAGGGGGTGTGTTAGCAGGAACTGCCACAACCAATGTGTTTAGCAACCCCGGGTTCAATCATACAATGAAGGCAATTCAGTCTCCATGTTGTAGCCCTGATGAAGTAATATTTGGCTATGATTTTCACCAATCATTGTATTGCCATCTCTTGTGTGGTCTAATCTTTAGAGAAGAAGTTCAGTTGGTGTCTTCTACTTTTGCACATAGCATTGTGTATGCTTTCAGATACTTTGAGCAAGCTTGGGAAGAGCTTTGTGGTGATATAAGAGAAGGGGTCATTAATAGCATGATCACAGTTCCATCAATGAGAACAGCTATGTCTAAATTGCTGAAACCTGATCCTGAATTGGCCAACTTGATCCAAAACAAGTGCATGGGACTGAGCAATTGGTATGGAGTGATACCAGCGCTTTTTCCTAATGTTAAGTATGTTTATGGCATCATGACTGGGTCAATGGTGTCTTATTTGAAAAAGTTAAGGCATTATGCAGGAGAGTTGCCTTTGTTGACTTCTGACTATGGAGCTTCTGAAGGGTGGATTGCAACAAATGTGAATCCAACATTGCCCCCTGAATTGGCCACATACACTGTGCTACCTCAAATTGGTTATTTTGAATTCATCCCTCTCATAGACTTTGAGGGAGCTAAGGTAGATCCTTCTTTTCTCTGTATGGATCCGGAGCCTGTGGGCCTCACTGAAGTTAAGGTTGGTGAGGAGTATGAGATTCTCATCACCAATCCAGCAGGCTTGTACCGGTACAAGCTAGGGGATGTGATAAAGGTGACAGGGTTCCATAATTCAACCCCAGAAGTAAAATTTGTTCGGCGTAGCAATGTTGTGCTTACAATTAACACTGACAAAAACACAGAGAATGATTTGCATTTGGCTGTGGAAGCAGCATCGAAATTGTTGGCAGAGGAGAAATTGGAAGTTGTTGACTACACAAGTCATGTAGATTTATCAAAGGAACCAGGACACTATGTCTTATTCTTGGAAATAAGTGGTGAAGCAAGTGATGAAGTGCTTCTTGAATGCTGCAACTGTTTAGACAAGTCTTTTGTTGATGCTGGCTATACTAGTTCTCGTAGAGTCAATTGCATTGGAGCACTTGAACTCCGAATTGTTAGGAGAGGAACGTTTCAGAAGATTCTAGAACATTACCTAGCATTAGGAGCTGCTGTGAGTCAATTCAAGACACCAAGATGTGTAGGTCCTACAAACATCAAAGTGTTGCAAATATTGAGTGACAATGCTGTGAAGAACTATTTTAGTACTGCTTTCAATTGA 1749 0.4099 MLEKVEEFNMDKVIEKFERITKDAERIQRETLRRILEDNASCEYLQNLGLNGRTDPESFKDCVPLVSHIELEPYINRILDGDDSPILTSKPITAMSLSSGTTQGKPKYVPWNDELFETTVQIYHTSFAFRNREFPTKNGKALSFNYSSKQFKTKGGVLAGTATTNVFSNPGFNHTMKAIQSPCCSPDEVIFGYDFHQSLYCHLLCGLIFREEVQLVSSTFAHSIVYAFRYFEQAWEELCGDIREGVINSMITVPSMRTAMSKLLKPDPELANLIQNKCMGLSNWYGVIPALFPNVKYVYGIMTGSMVSYLKKLRHYAGELPLLTSDYGASEGWIATNVNPTLPPELATYTVLPQIGYFEFIPLIDFEGAKVDPSFLCMDPEPVGLTEVKVGEEYEILITNPAGLYRYKLGDVIKVTGFHNSTPEVKFVRRSNVVLTINTDKNTENDLHLAVEAASKLLAEEKLEVVDYTSHVDLSKEPGHYVLFLEISGEASDEVLLECCNCLDKSFVDAGYTSSRRVNCIGALELRIVRRGTFQKILEHYLALGAAVSQFKTPRCVGPTNIKVLQILSDNAVKNYFSTAFN* 583
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr10g1242 582 PANTHER GH3 DOMAIN-CONTAINING PROTEIN 1 582 IPR004993 -
Apr10g1242 582 Coils Coil 10 30 - -
Apr10g1242 582 PANTHER INDOLE-3-ACETIC ACID-AMIDO SYNTHETASE 1 582 - -
Apr10g1242 582 Pfam GH3 auxin-responsive promoter 16 557 IPR004993 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr10g1242 Apr-Chr10 24816174 24821319 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr10g1242 17 579 EF-hand Containing Proteins AT1G23160 37.716 3.28e-131 394
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr10g1242 K14506 - gmx:100813492 1006.9
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr10g1242 10 24816174 24821319 Apr10g1242 10 24816174 24821319 ECH
Apr4g0907 4 7289275 7294501 Apr10g1242 10 24816174 24821319 PCT