Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr10g1220 ATGGCACCAAGAAACAGTCGTGGAAAGGCCAAGGGAGAGAAGAAGAAGAAGGAAGAAAAGGTTCTTCCTGTTGTCTTGGATATCACTGTGAACCTTCCCGATGAAACTCGTGTTGTTCTCAAGGGAATATCAACGGACAGAATAATAGATGTTCGTCGGCTTTTATCGGTGAATACAGAGACATGCTTTATCACAAATTTTTCCTTGTCGCATGAGGTACGAGGGGCCCGTTTGAAGGACACGGGGGACGTGTCCGCACTGAAGCCCTGCGTCCTCACTTTAGTTGAAGAGGATTACGATGAAGATCGAGCAGTGGCGCACGTGCGAAGACTCCTCGACATCGTCGCCTGCACCACCAGCTTCGGTCCGTCGTCTCTGCCGCCTCCGAAAAATGCAGCCGCCACCGTGCCGAAGTCCGGCACGCCTCAATCGCCGCCGGCGAAGCAACCTCCGAAAGATGCGGTGGCGGCAGCGGACGTAGATGGAGAGATAAGCCACTCGTGCCCTAAGCTGGAGAATTTCTACGAGTTTTTCTCACTCTCTCACCTCACTGCTCCTCTCCAATATGTGAAGAAGGCTTCGAGGCGGCGCGTGGAGGAGATATCGGAGGCGGATCATCTGTTCTCGCTCGATGTGAAGCTGTGTAACGGGAAAGTGGTGCATGTTGAGGCTTGCAGAAAGGGATTTTACAGCGTTGGGAAGCATCGGATTCTGTGTCATAATCTTGTTGATTTGTTGAGACAGCATAGCAGAGCTTTCGATGATGCTTTCGATGATCTCTTGAAGGCATTTTCAGAACGAAACAAGTTTGGGAATCTCCCCTATGGCTTCAGAGCCAACACATGGCTTGTTCCTCCTGTTGCAACACAATCACCCTCATCCTTTCCTCCTCTTCCTGTGGAAGACGAAACATGGGGAGGGAATGGTGGTGGTCTTGGAAGAGATGGAAAGTATGATTTGGTTCCTTGGGCCAATGAGTTTTCATCTATTGCATCTATGCCTTGCAAGACAGCAGAAGAAAGGCAAGTTCGAGATAGGAAAGCGTTTCTTCTGCACAGCCTGTTTGTTGATGTTGCAATTTTCAGAGCAATAAGGGCTGTTAGACATGTTATGGAAGAGCCCAATTTTAACTGCTCAGTTGCAGAAAACGATATCAGTTACACCGAGAGAGTAGGTGACTTGAGTATCAAAGTCTGGAAAGATGGTTCTGTTGCGAGCTGTAAGATTGATACTAAAATTGATGGAGTTGAAGCTACTGGAGTAAATCAAAAGGATATAGTAGAACGAAATCTACTGAAAGGAATCACTGCTGATGAAAATACTGCTGCCCATGATGTAACCACTTTAGGCGTTATCAATGTAAGATATTGTGGTTATGTAGTCGTTGTGAAAGTTGAGGGTGGAATTAATGAAACTGTTAACTCTCCATCTCATCAAAATACCGAGTTGTATGATCAGCCAGAGGGTGGTGCCAACGCCCTCAATATTAACAGTCTGAGATTACTTCTTCACAACACAACCACACCAGAAAACAATAAACCAATGACCCAGATACAGACGTTTGAGAGTGAAGAGCTTGGTGGTTCCCATGCCTGTGTGGAGAGACTGATTAAAGAAAGTCTTGCTAAGCTTGAGGAGGAAGAACCAGGAATTGACTATTTTGTAAGATGGGAACTTGGAGCTTGCTGGATACAACATTTGCAAGACCAAAATAGTACTGAAAAAGATAAGAAACCATCTTTGGAGGAGGCTAAGAATGAAATGAGGGTCGAGGGTCTTGGGAAACCCCTTAAAGCACTAAAGACTTATAAAAAGAAATCCAACTCAAGCAATCCTAATTCTGCATCTGAATATTCAAAATTTAATCAGGAGGCTGAAAGTACTTCATTTCCCTCGGCTGAATCTCAGCATGAAACTTCAGCAGCTGAGAATGAGCTTGTTCTAAAAAGGATATTATCTGAGGAAGCTTTTGGCAGATTAAAAGAATCAGGAACTGGACTTCACTGCAAGTCCATGCAAGATTTGATTGACTTATCTCGAAAATATTACACAGATGTTGCTCTCCCGAAACTGGTAGCAGATTTTGGCTCATTGGAACTCTCACCAGTTGACGGCCGTACTCTAACAGATTTTATGCATACTAGGGGTTTACGAATGCGTTCTCTTGGACATGTTGTCAAGCTTTCAGAAAAGCTTTCACACGTGCAATCACTTTGTATTCATGAGATGATAGTTCGAGCTTTTAAGCACATCTTGCGGGCAGTGATTTCTGCTGTCGACAAGGAGAAAATGGCTTCATCAATTGCTGGTGCACTGAATTTGCTGCTAGGTGTTCCTGAAAATAGAGAATCAGATGAAGTTTATCCCTCAGTGTGGAAATGGCTAGAGTTGTTTTTGAAGAAACGATTTGATTGGGATCTGAACAGGTTGAATTACAAAGATGTGAGGAAATTTGCAATTTTACGTGGCTTGTGTCACAAGGTGGGAATTGAGCTTGTTCCAAGGGATTTTGATATGGATTCTGCGATTCCCTTCCACAAATCTGATATTGTCAGCTTGGTCCCAGTTCACAAGCAAGCAGCATGCTCCTCTGCAGATGGAAGGCAGCTCCTAGAGTCATCCAAAACTGCTTTAGACAAGGGAAAGCTTGAGGATGCAGTTACCTATGGCACAAAGGCTCTTGCTAAGCTGGTAGCAGTATGTGGTCCCTACCATCGGATGACGGCAGGAGCATACAGCCTCCTTGCTGTAGTTTTATATCATACTGGAGACTTCAATCAGGCTACAATTTATCAACAAAAAGCTTTGGATATCAATGAGAGAGAGTTAGGTCTGGATCATCCTGATACCATGAAGAGCTATGGGGATCTTGCAGTTTTCTATTACAGGCTTCAACACACAGAGCTGGCTCTTAAGTATGTGAAGCGTGCTTTATATCTTCTGCACCTGACATGTGGCTCATCTCATCCAAACACTGCTGCTACTTACATTAATGTGGCTATGATGGAAGAAGGTCTGGGAAATGTACATGTTGCTCTCAGATATCTTCACAAAGCTTTAAAGTGCAACCAAAGATTACTTGGGGCAGATCATATTCAGACAGCTGCCAGTTATCATGCAATAGCAATAGCGCTCTCATTGATGGAAGCATATCCATTGAGTGTGCAGCATGAGCAAACAACTTTGCAAATTCTGCGAGCAAAACTTGGCCCTGATGACCTGCGTACACAGGATGCTGCAGCTTGGCTTGAGTATTTTGAATCCAAGGCTTTTGAGCAGCAAGAGGCTGCTCGAAATGGTACTCGAAAACCTGATGCATCAATAGCTAGCAAAGGCCATCTAAGCGTGTCAGATCTGCTTGACTACATTAATCCTAATCACGATGCTAAAGGAAGAGATGCAGCATCAAAGAGAAGAAGCCAGATAACAAAGGTGAGAGCAACATCCTATAAAACCATTGGCACGACAAGTTCTGACGAGTCATCAAAAGAAATTCGAAAAGATGCTTCAGATGAAGAAGAGCTACCAATACCTGAATCAGTAGGTAATGCAGATTCCGAGCAGGAGAGCAACTCTGCACCTGATTCTGAACAGACTATTTTGACAAAGATTTCAGACGAAAAGCCACAAATTTATGGTGAAATCTTGTCTGAAGCACATGCTGATGGAGAGGATGGATGGCAACCAGTTCAAAGACCAAGATCAATTGGCTCATACATCCGGCGACTGAAGCAGAGACGGGCAACACTTGGCAAAGTTTATAGTTATCAGAAGAATGTGGATGTTAGTACAGAATATCCTTTAGCAAGGAGTGCTAATCAGAATAGTAGGTATTTTTTCTTGAAGAAGCGGACAATATCTCATGTGGGTTATACAGATAATCATAATGTAAACATCACCCAAGGCACAAAGTTTGGAAGGAAAGTAGTCAAAGCTGTTACATACAGGGTCAAGTCCATGCCCTTGACTTCCAAGACTTGTGCAAATGAGACAATAGAAAATGGTGACAAGCTATTCAATTCTCTCTCAGAATCTGATCCTAATGATGTTAATCCAGCTAAGAATTCTATAGTTAGCATTGGAAAATCTCCTTCATACAAGGAAGTGGCCTTGGCTCCTCCAGGGACAATCTCCAAGTTGCAGGTCTATAATCCTCAAGGTGAGATTCCTGTTAGCTGTGAACATAACGATGGCAAAAATGAAGAGGAAGATATTGAAGCTGATAGAAATGTTAATCTAACCCTGAAAGAGGTAAATGATACGGTTAAAGAAAAGTATGATGATTCCTTATCAGATTCTGTGGATGATTCACAAGATGGTGCTGAAGTTGCTATTGAGGGGAATGAGGAAACTCATTTCATTGATGCTGTGCAAGGTAATTCTAGGACTGATGAGGGGCAATCAGGAGACATCGAGGGTCAAGGAGCAGTTGATAAAAGCTTATTGATTCATGCAGTTGACAATCCAGAGGATTCTTACAAACAAGAATTTGACGTGAGTAATTCATCAGGAAGTTCAGAACCTAGTGATAGTACAAATACCATTTCACAGAGTGGTGAGGATTTAAGGGTCAATTTATCACCATCAAGTCAGAGCAATATTGGGAGCATCCCATATAAGAAATTGTCTGCATCTGCAGCCCCATTCAATCCATCACCTGCCATTGCACGTGCTGCACCAATTGCCATGAATATGCCTCTTCCTTCTGGTCCTGCTGCTGTTCCGGCAATTGGCCCCTGGCCAGTAAACATGAATGTTCACCCTGGACCTGCTAATGTGCTACCCACTGTTACCCCAATGTGCTCCTCTGCTCACCATGCATATCCATCACCACCACCAACACCAAACATGATACAGCCACTGCCTTTTATCTATCCTCCTTATACTCAACCTCAATCAGTATCAAATAGCAACTTTCCAGTCACTAGCAGTGCCTTTCATGGCAATCATTTCACATGGCAATGTAATTTAAACCCCACCATATCTAAGTTTGGTCCTAGTGCTGTTTGGCCTGGTTGTCATCCTGTGGAATTTCCTCTTCCAATACCGATGGTTGAACCAATCCCTGATCCCATTTCAGAGTCACAAGTTCTGTTTCATGGTTCTGAAAGTCCAGGTTCAGCTTCAGTTCTTCCTGAGGACATTGATAATGTTGGGGATTACAATAAAGAGGTAGAAAGTTTAGAATCAGAGAGAAGTGAAAATGAAGCAGTGAGAGTTAGTTCAGAAACTGTAAAACAAAATGGCACTCCAAATTTTCACGGGACTGAAAATACTGGGAGCAACCCAGATCATAACATTGGTTCAACTGGCAACACTAGCAGTAGTGAAACAAACATGGATGGTGAGAAAACCTTCAGCATTTTGATTCGGGGAAGAAGAAATCGAAAGCAGACTCTGAGAATGCCAATAAGTTTGCTTACTCGACCTCATGGCTCTCAGTCATTTAAGGTTATTTATAACCGTGTAGTTAGAGGAAGTCATGCTACCAAGTCTATCAATTTATCTTCTAATAAAGATTGTACTGCAACTGCTTAA 5538 0.4321 MAPRNSRGKAKGEKKKKEEKVLPVVLDITVNLPDETRVVLKGISTDRIIDVRRLLSVNTETCFITNFSLSHEVRGARLKDTGDVSALKPCVLTLVEEDYDEDRAVAHVRRLLDIVACTTSFGPSSLPPPKNAAATVPKSGTPQSPPAKQPPKDAVAAADVDGEISHSCPKLENFYEFFSLSHLTAPLQYVKKASRRRVEEISEADHLFSLDVKLCNGKVVHVEACRKGFYSVGKHRILCHNLVDLLRQHSRAFDDAFDDLLKAFSERNKFGNLPYGFRANTWLVPPVATQSPSSFPPLPVEDETWGGNGGGLGRDGKYDLVPWANEFSSIASMPCKTAEERQVRDRKAFLLHSLFVDVAIFRAIRAVRHVMEEPNFNCSVAENDISYTERVGDLSIKVWKDGSVASCKIDTKIDGVEATGVNQKDIVERNLLKGITADENTAAHDVTTLGVINVRYCGYVVVVKVEGGINETVNSPSHQNTELYDQPEGGANALNINSLRLLLHNTTTPENNKPMTQIQTFESEELGGSHACVERLIKESLAKLEEEEPGIDYFVRWELGACWIQHLQDQNSTEKDKKPSLEEAKNEMRVEGLGKPLKALKTYKKKSNSSNPNSASEYSKFNQEAESTSFPSAESQHETSAAENELVLKRILSEEAFGRLKESGTGLHCKSMQDLIDLSRKYYTDVALPKLVADFGSLELSPVDGRTLTDFMHTRGLRMRSLGHVVKLSEKLSHVQSLCIHEMIVRAFKHILRAVISAVDKEKMASSIAGALNLLLGVPENRESDEVYPSVWKWLELFLKKRFDWDLNRLNYKDVRKFAILRGLCHKVGIELVPRDFDMDSAIPFHKSDIVSLVPVHKQAACSSADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGSSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGADHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLEYFESKAFEQQEAARNGTRKPDASIASKGHLSVSDLLDYINPNHDAKGRDAASKRRSQITKVRATSYKTIGTTSSDESSKEIRKDASDEEELPIPESVGNADSEQESNSAPDSEQTILTKISDEKPQIYGEILSEAHADGEDGWQPVQRPRSIGSYIRRLKQRRATLGKVYSYQKNVDVSTEYPLARSANQNSRYFFLKKRTISHVGYTDNHNVNITQGTKFGRKVVKAVTYRVKSMPLTSKTCANETIENGDKLFNSLSESDPNDVNPAKNSIVSIGKSPSYKEVALAPPGTISKLQVYNPQGEIPVSCEHNDGKNEEEDIEADRNVNLTLKEVNDTVKEKYDDSLSDSVDDSQDGAEVAIEGNEETHFIDAVQGNSRTDEGQSGDIEGQGAVDKSLLIHAVDNPEDSYKQEFDVSNSSGSSEPSDSTNTISQSGEDLRVNLSPSSQSNIGSIPYKKLSASAAPFNPSPAIARAAPIAMNMPLPSGPAAVPAIGPWPVNMNVHPGPANVLPTVTPMCSSAHHAYPSPPPTPNMIQPLPFIYPPYTQPQSVSNSNFPVTSSAFHGNHFTWQCNLNPTISKFGPSAVWPGCHPVEFPLPIPMVEPIPDPISESQVLFHGSESPGSASVLPEDIDNVGDYNKEVESLESERSENEAVRVSSETVKQNGTPNFHGTENTGSNPDHNIGSTGNTSSSETNMDGEKTFSILIRGRRNRKQTLRMPISLLTRPHGSQSFKVIYNRVVRGSHATKSINLSSNKDCTATA* 1846
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr10g1220 1845 CDD CLU-central 702 839 IPR033646 -
Apr10g1220 1845 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT EIF-3 1 1827 IPR027523 GO:0006996
Apr10g1220 1845 SUPERFAMILY Hypothetical protein c14orf129, hspc210 185 269 IPR023231 -
Apr10g1220 1845 PANTHER TETRATRICOPEPTIDE REPEAT (TPR)-LIKE SUPERFAMILY PROTEIN 1 1827 - -
Apr10g1220 1845 ProSiteProfiles Clueless (Clu) domain profile. 301 578 IPR025697 -
Apr10g1220 1845 SUPERFAMILY TPR-like 946 1073 IPR011990 GO:0005515
Apr10g1220 1845 MobiDBLite consensus disorder prediction 1740 1781 - -
Apr10g1220 1845 SMART tpr_5 993 1026 IPR019734 GO:0005515
Apr10g1220 1845 SMART tpr_5 909 942 IPR019734 GO:0005515
Apr10g1220 1845 SMART tpr_5 951 984 IPR019734 GO:0005515
Apr10g1220 1845 Gene3D Tetratricopeptide repeat domain 982 1115 IPR011990 GO:0005515
Apr10g1220 1845 Gene3D Tetratricopeptide repeat domain 868 981 IPR011990 GO:0005515
Apr10g1220 1845 MobiDBLite consensus disorder prediction 569 641 - -
Apr10g1220 1845 Pfam Translation initiation factor eIF3 subunit 135 700 838 IPR033646 -
Apr10g1220 1845 MobiDBLite consensus disorder prediction 1141 1159 - -
Apr10g1220 1845 MobiDBLite consensus disorder prediction 1495 1518 - -
Apr10g1220 1845 Pfam Tetratricopeptide repeat 908 978 - -
Apr10g1220 1845 Pfam Tetratricopeptide repeat 992 1066 - -
Apr10g1220 1845 MobiDBLite consensus disorder prediction 1183 1197 - -
Apr10g1220 1845 MobiDBLite consensus disorder prediction 603 641 - -
Apr10g1220 1845 MobiDBLite consensus disorder prediction 125 155 - -
Apr10g1220 1845 MobiDBLite consensus disorder prediction 1726 1781 - -
Apr10g1220 1845 MobiDBLite consensus disorder prediction 570 594 - -
Apr10g1220 1845 Pfam Mitochondrial function, CLU-N-term 45 115 IPR028275 -
Apr10g1220 1845 ProSiteProfiles TPR repeat profile. 909 942 IPR019734 GO:0005515
Apr10g1220 1845 SUPERFAMILY TPR-like 875 980 IPR011990 GO:0005515
Apr10g1220 1845 MobiDBLite consensus disorder prediction 1127 1197 - -
Apr10g1220 1845 MobiDBLite consensus disorder prediction 1488 1518 - -
Apr10g1220 1845 MobiDBLite consensus disorder prediction 1160 1174 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr10g1220 Apr-Chr10 24553539 24568065 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr10g1220 K03255 - gmx:100784117 3006.47
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr10g1220 10 24553539 24568065 Apr10g1220 10 24553539 24568065 ECH
Apr4g0922 4 7479078 7492924 Apr10g1220 10 24553539 24568065 PCT