Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr10g0489 ATGGCCACTGCCAACCCTTTCGATTTGTTGGGTGATGATGCCGAGGACCCGTCGCAGTTGATCGCCGCCGAGCAGATTAAAGCTGCCGCGGCGCCGAAGAAGGAACAGCCCAAGCCTGCCTCGCGTGCCGGCTCTGCTCAGCAGAACAAGCCGGCTCAGTTGCCTTCTAAGCCGCTCCCTCCCTCTCAGGCTGTGAGGGAGGCAAAAAATGATGCTCCTCGTGGTGGCCGTGGAGGCAGCCGAGGAGGTGGACGTGGGCGTGGTCACGGTGGTAGTGGCTTTAACCGTGATTTTTCCAATGATGAGAACTCGTCAGCTCCTGCTAGCCAAGGTGCTTTTGAAGAAGGGGATACCGGCAATCCCTCAGAAAGACGCGGATATGGTGGACCTCGTGGTCCTTATCGTGGCGGTCGTCGTGGAGGTTTCAGCAATGGTGAAGCTGGTGAAGAGGGACGCCCTCGAAGAGCATTTGAACGCCGCAGTGGGACTGGACGAGGAAGTGAAATCAAACGTGAAGGTTCTGGGCGTGGGAACTGGGGAACACAGACTGATGAAATTGCCCAGGTGACTGAGGAAGTGGTGAATGAAACTGAAAAGAATTTGGGGGATGAGAAGCCTTCAGGAGAAGACGAAGCAGCTGATGGGAACAAGGACAGCCCTGCTAATGAAAATGAAGAAAAGGAGCCTGAGGATAAGGAGATGACACTGGAAGAGTATGAGAAACTGTTGGAAGAAAAAAGGAAGGCCCTGCAGGGACTCAAGACTGAAGTGAGAAAGGTGGATACTAAGGAGTTTGAGACCATGCAGCCACTGTCAAACAAGAAAGACAATGATGAGATCTTCATTAAATTGGGATCTGACAAGGATAAGCGCAAAGATGCTTTTGAGAAGGAGGAGAGATCCAAGAAGTCTGTCAGCATTAACGAGTTTCTGAAGCCTGCTGAAGGAGAAAGGTACTACAACCCTGGTGGTCGTGGTCGGGGACGCGGTCGTGGTTCCAGAGGAGGTTATGGCGGAAATGCAGGCAGCAATGTACTAGCTCCTTCGATTGAGGATCCTGGGCAATTCCCATCCTTGGGTTTTGGCAAGTGA 1092 0.5275 MATANPFDLLGDDAEDPSQLIAAEQIKAAAAPKKEQPKPASRAGSAQQNKPAQLPSKPLPPSQAVREAKNDAPRGGRGGSRGGGRGRGHGGSGFNRDFSNDENSSAPASQGAFEEGDTGNPSERRGYGGPRGPYRGGRRGGFSNGEAGEEGRPRRAFERRSGTGRGSEIKREGSGRGNWGTQTDEIAQVTEEVVNETEKNLGDEKPSGEDEAADGNKDSPANENEEKEPEDKEMTLEEYEKLLEEKRKALQGLKTEVRKVDTKEFETMQPLSNKKDNDEIFIKLGSDKDKRKDAFEKEERSKKSVSINEFLKPAEGERYYNPGGRGRGRGRGSRGGYGGNAGSNVLAPSIEDPGQFPSLGFGK* 364
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr10g0489 363 MobiDBLite consensus disorder prediction 287 363 - -
Apr10g0489 363 Pfam Stm1 1 79 IPR019084 -
Apr10g0489 363 MobiDBLite consensus disorder prediction 287 306 - -
Apr10g0489 363 PANTHER HYALURONIC ACID-BINDING PROTEIN 4 1 360 IPR039764 GO:0003723
Apr10g0489 363 Pfam Hyaluronan / mRNA binding family 153 259 IPR006861 -
Apr10g0489 363 MobiDBLite consensus disorder prediction 176 195 - -
Apr10g0489 363 MobiDBLite consensus disorder prediction 24 235 - -
Apr10g0489 363 MobiDBLite consensus disorder prediction 148 172 - -
Apr10g0489 363 MobiDBLite consensus disorder prediction 196 235 - -
Apr10g0489 363 SMART HABP4_PAI_RBP1_2 153 261 IPR006861 -
Apr10g0489 363 MobiDBLite consensus disorder prediction 96 111 - -
Apr10g0489 363 Gene3D - 151 264 - -
Apr10g0489 363 Coils Coil 236 263 - -
Apr10g0489 363 PANTHER NUCLEAR RNA-BINDING-LIKE PROTEIN 1 360 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr10g0489 Apr-Chr10 11851348 11855331 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr10g0489 K13199 - gmx:100791259 452.21
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr10g0489 10 11851348 11855331 Apr10g0489 10 11851348 11855331 ECH
Apr10g0489 10 11851348 11855331 Apr4g2389 4 32798528 32803895 PCT