Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr10g0368 ATGGCACAACGTTCTCATGTACCCAAATTTGGCAATTGGGAAAGTGGAGACAATGTTCCTTATACAGCATATTTTGACAAGGCCCGGCAAGGTCGAACTGGCACGAAGATAATAAACCCAAATGACCCAGAGGAAAACTCAGATTTTGCTCTTGATAATCCATCTTCTGACAACATACCTCCTTCCAAACCCAGAGTTAATTCAGACGATCCATCTGAGAAGGGATCACTGCATTCAACAAATGAGTTACATAAAAGCATTGAAGATGGTGAACCTAAGCATTTTATTGACTCTCCGGCTCGTCATGACAATCTAGGCAGCAGGAGTGGCAGTGATTCAACAACTCGTCAGGGAGTAGGAGGTTCTGCAGACAACCGTAGGAGACCTTCAAGACAAAGCACTGGCTCTGAATACAGCATTGAACGTTCCCCTCTTCATCGCCATGCAAGAGCCACGGGCAGAGACAGTCCCTCATGGGAAGGAAAGAGTTCTTATGACACCAGCCATGGAACACCAGGAAGATCCCGGTTAAGACCAGTTAATCGTGGAGATGAAACTCCTGATAAAGGTGCAGCTGTTCCAAAGTTTGGTGAGTGGGATGTGAACAACCCTGCATCAGCAGATGGCTATACTCACATTTTCAATAAAGTGAGGGAGGAGAGACAGGGCGGGCCAGGACATGTGCCAGGCACACCTAATGAGAGACCACATGCTATCAGGGGCCAACCTACCCATGACAAAGCCCAGTGTTGCTGCTTTGGGTGGGGCAAAAAATAA 777 0.4723 MAQRSHVPKFGNWESGDNVPYTAYFDKARQGRTGTKIINPNDPEENSDFALDNPSSDNIPPSKPRVNSDDPSEKGSLHSTNELHKSIEDGEPKHFIDSPARHDNLGSRSGSDSTTRQGVGGSADNRRRPSRQSTGSEYSIERSPLHRHARATGRDSPSWEGKSSYDTSHGTPGRSRLRPVNRGDETPDKGAAVPKFGEWDVNNPASADGYTHIFNKVREERQGGPGHVPGTPNERPHAIRGQPTHDKAQCCCFGWGKK* 259
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr10g0368 258 MobiDBLite consensus disorder prediction 34 65 - -
Apr10g0368 258 Pfam Cleavage site for pathogenic type III effector avirulence factor Avr 187 222 IPR008700 -
Apr10g0368 258 MobiDBLite consensus disorder prediction 67 101 - -
Apr10g0368 258 MobiDBLite consensus disorder prediction 141 155 - -
Apr10g0368 258 MobiDBLite consensus disorder prediction 157 171 - -
Apr10g0368 258 MobiDBLite consensus disorder prediction 1 20 - -
Apr10g0368 258 PANTHER RPM1-INTERACTING PROTEIN 4 (RIN4) FAMILY PROTEIN 1 255 IPR040387 -
Apr10g0368 258 MobiDBLite consensus disorder prediction 26 247 - -
Apr10g0368 258 MobiDBLite consensus disorder prediction 104 140 - -
Apr10g0368 258 PANTHER RIN4, PATHOGENIC TYPE III EFFECTOR AVIRULENCE FACTOR AVR CLEAVAGE-RELATED 1 255 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr10g0368 Apr-Chr10 9086386 9090236 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr10g0368 K13456 - gmx:100808509 413.305
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr4g1791 4 24614545 24618113 Apr10g0368 10 9086386 9090236 PCT