Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo20g3621 ATGGGGAGGAAATGGTTTGAGAGATGGGTTATGGTAGAAGCAGTTGTTGAAGTGATTAGTATAATTATTATGATGAGTTGGTGTGTGGAAGGGGTTGGAGTGAATTGGGGAACACAAGCTACACAGCAATTGAGAGCAGATACAGTGGTGCAGATGATGAAGGACAATGGAATAGAGAAAGTGAAACTGTTTGATGCAGATGGAAGAATCATGAGTGCACTTGCTGGGTCTGGGATTGAAGTTATGGTTGCCATTCCCAATGACCAGCTTGCTGCCATGACTAGCTATGATCGAGCTGTTCAGTGGGTCAGAAAGAATGTTACCAGTTACAACTTCAAGGGTGGAGTTAACATCAAGTCAATATGTAGCAGTTGGGAACGAACCATTCTTGAAATCATACAACAATTCATTCTTGAATCAGGAACTTTTAGGCCTGACATATCAGATCTCATGACACAAATAGTGCAATTCTTGCACAACAACAATGCACCATTCACCGTTAACATCTACCCATTCTTGAGTCTCTATGGCAATGATGATTTCCCTTTTGACTATGCCTTCTTTGATGGGGTATCCAACCCCATAAACGACAATGGGGTTCTTTACACCAATGTCTTTGATGCAAATTTTGACACCTTGGTTTCTGCTCTCAAAGGGGTTGGGTATGGTGACATGGCAATCTTGGTTGGAGAAGTAGGGTGGCCCACAGATGGAGACAAGAATGCCAACGTGGCCAATGCTGTAAGGTTCTATAATGGACTTCTTCCAAGGATTTCATCAAGTAAAGGTACACCTCTAAGACCAGGGCACCTTCAAGTTTATCTCTTTGGCCTTATTGATGAGGATGCTAAGAGCATTGCTCCTGGCAACTTTGAGCGTCATTGGGGAATATTCCGGTATGATGGACAACCTAAGTTCCCAATGGATCTTTCTGGTCAAGGTCAAAACAAAATATTAGTGGGTGCTAAGAATGTGATTTACTTGGACCCAAAATGGTGCATGTTCAATCCAGATGCCACGGATCTTAGCAAACTAGCTGATAATATAAACTATGCTTGCACATTTGCGGATTGCACTGCATTAGGATATGGTTCTTCATGCAACAATCTTGATGCTAATGGGAATGCCTCATATGCATTTAATATGTACTACCAAGCGCAAAATCAGAATGACATGGCTTGCAATTTTGAAGGCTTAGCCCAAATTACTATGAAGAATATTTCTACTCCCACTTGCGACTTTATTATTCAGATAAACCCTTCATCATCTTCTTCTTTGACACCCTCATCAGCAGTAGCTTTCTTATTTATTGCATTAGCCATTATTCTATTTTTTTAG 1338 0.4103 MGRKWFERWVMVEAVVEVISIIIMMSWCVEGVGVNWGTQATQQLRADTVVQMMKDNGIEKVKLFDADGRIMSALAGSGIEVMVAIPNDQLAAMTSYDRAVQWVRKNVTSYNFKGGVNIKSICSSWERTILEIIQQFILESGTFRPDISDLMTQIVQFLHNNNAPFTVNIYPFLSLYGNDDFPFDYAFFDGVSNPINDNGVLYTNVFDANFDTLVSALKGVGYGDMAILVGEVGWPTDGDKNANVANAVRFYNGLLPRISSSKGTPLRPGHLQVYLFGLIDEDAKSIAPGNFERHWGIFRYDGQPKFPMDLSGQGQNKILVGAKNVIYLDPKWCMFNPDATDLSKLADNINYACTFADCTALGYGSSCNNLDANGNASYAFNMYYQAQNQNDMACNFEGLAQITMKNISTPTCDFIIQINPSSSSSLTPSSAVAFLFIALAIILFF* 446
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo20g3621 445 PANTHER GLUCAN ENDO-1,3-BETA-GLUCOSIDASE BG1-RELATED-RELATED 140 430 IPR044965 GO:0004553|GO:0005975
Amo20g3621 445 Gene3D - 328 425 - -
Amo20g3621 445 Gene3D Glycosidases 128 317 - -
Amo20g3621 445 SMART X8_cls 331 414 IPR012946 -
Amo20g3621 445 SUPERFAMILY (Trans)glycosidases 32 309 IPR017853 -
Amo20g3621 445 PANTHER GLYCOSIDE HYDROLASE, FAMILY 17, X8 140 430 - -
Amo20g3621 445 Pfam Glycosyl hydrolases family 17 32 110 IPR000490 GO:0004553|GO:0005975
Amo20g3621 445 Pfam Glycosyl hydrolases family 17 139 309 IPR000490 GO:0004553|GO:0005975
Amo20g3621 445 PANTHER GLYCOSIDE HYDROLASE, FAMILY 17, X8 15 122 - -
Amo20g3621 445 PANTHER GLUCAN ENDO-1,3-BETA-GLUCOSIDASE BG1-RELATED-RELATED 15 122 IPR044965 GO:0004553|GO:0005975
Amo20g3621 445 Pfam X8 domain 331 400 IPR012946 -
Amo20g3621 445 Gene3D Glycosidases 31 127 - -
Amo20g3621 445 ProSitePatterns Glycosyl hydrolases family 17 signature. 225 238 IPR000490 GO:0004553|GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo20g3621 Amo-Chr20 146758396 146760314 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo20g3621 11 418 Miscellaneous Gene Families AT1G64760 62.667 0.0 561
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo20g3621 - - gmx:102666963 664.84
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo06g2264 06 80423308 80426729 Amo20g3621 20 146758396 146760314 PCT
Amo20g3621 20 146758396 146760314 Amo06g2264 06 80423308 80426729 PCT