Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo06g2264 ATGCTATTATTTTCTTGGATGGGAAAGTTGGGGCCTTTGATCTTAGTAGCTCTGTTATTGTTTCTGTGGTGCTGCCATGCCGTTGTGGAAGGGCTGGGTGTGAATTGGGGAACGCAAGCAACGCACAAGTTGCCACCGGACACGGTGGTGCAGATGCTGAAGGACAATGGGATTCAGAAGGTGAAGCTGTTCGATGCAGAAGAATCAACAATGAGTGCTCTTGCTGGCACTGGAATCGAGGTCATGGTTGCCATACCTAACATCCAGCTTGCTGATATGAATGACAATGATAAAGCCAAACAGTGGGTTAAGAAGAGTGTTACAAGGTACAACTTCAATGGCGGTGTTAACATCAAGTATGTAGCTGTTGGGAACGAGCCATTTTTGAAATCATACAATAATTCATTCTTGAATGTCACATTCCCTGCACTGCAAAACATTCAAAATGCACTTAATGAAGCTGGTGTTGGTGATAAGATTAAGGCTACAGTGCCCTTAAATGCTGATGTTTATGAGTCTCCGGCAAACAATCCTGTTCCATCTTCTGGAACATTCCGGGCTGATATCAATGACCTAATGACCCAGATAGTAGCATTCCTCAGCAAGAATGGTGCACCATTTACAGTGAACATTTACCCTTTCTTGAGTCTCTATGGGCATGACGATTTCCCTTTTGATTATGCCTTCTTTGATGGTGTCACCAACCCCATAAACGATAACGGGACTCCGTACACCAATGTCTTCGATGCGAATTTTGATACCCTTGTTGCCGCTCTCAGCAAAGCAGGGTACGGAGACCTGCCCATAATTGTTGGAGAAGTTGGATGGCCTACTGACGGCGACAAGAACGCCAACACGCGCAATGCTTTGAGGTTCTACAATGGACTCCTGCCAAGGCTTGCAGCCAACAAAGGGACACCCCGCCGCCCTGGATACATCGAAGTCTATCTGTTCGGGCTCCTTGATGAGAATGGAAAGAGCATTCAGCCAGGGAACTTCGAGCGTCACTGGGGGATTTTCGGGTATGATGGGCAGCCTAAGTTCCCGATGGACCTTTCCGGCCAGAATCAGAACAAGATGCTCGTTGGTGCAAAAAATGTACAGTACCTCGAACAAGAATGGTGCATGTTTAATCCTAATGCTAAAGATCTCAGCAAGCTCGGGGAAAGTATCACTTATGCCTGCACCAATGGGGATTGCACTGCACTTGGCTATGGATCTTCATGCAACAATTTGGATGCTAATGGGAATGCTTCATATGCATTTAACATGTATTTTCAGATGCAAAATCAGAACCTTCAAGCCTGCAATTTTGGAGGTTTGGCGAAGCTTTCGTTGACAAACATTTCAACCGACACCTGCAATTTTCCCATTCAGATAAAGTCTTCATCACCACCCTCTTTGATGGTTCCCTCTCTCTTGGCTTCTTTATTGGTTGCTTTACCGGTGGTTCTGTTTATGTAG 1464 0.4563 MLLFSWMGKLGPLILVALLLFLWCCHAVVEGLGVNWGTQATHKLPPDTVVQMLKDNGIQKVKLFDAEESTMSALAGTGIEVMVAIPNIQLADMNDNDKAKQWVKKSVTRYNFNGGVNIKYVAVGNEPFLKSYNNSFLNVTFPALQNIQNALNEAGVGDKIKATVPLNADVYESPANNPVPSSGTFRADINDLMTQIVAFLSKNGAPFTVNIYPFLSLYGHDDFPFDYAFFDGVTNPINDNGTPYTNVFDANFDTLVAALSKAGYGDLPIIVGEVGWPTDGDKNANTRNALRFYNGLLPRLAANKGTPRRPGYIEVYLFGLLDENGKSIQPGNFERHWGIFGYDGQPKFPMDLSGQNQNKMLVGAKNVQYLEQEWCMFNPNAKDLSKLGESITYACTNGDCTALGYGSSCNNLDANGNASYAFNMYFQMQNQNLQACNFGGLAKLSLTNISTDTCNFPIQIKSSSPPSLMVPSLLASLLVALPVVLFM* 488
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo06g2264 487 Pfam X8 domain 374 442 IPR012946 -
Amo06g2264 487 ProSitePatterns Glycosyl hydrolases family 17 signature. 267 280 IPR000490 GO:0004553|GO:0005975
Amo06g2264 487 SUPERFAMILY (Trans)glycosidases 32 351 IPR017853 -
Amo06g2264 487 PANTHER GLUCAN ENDO-1,3-BETA-GLUCOSIDASE BG1-RELATED-RELATED 16 474 IPR044965 GO:0004553|GO:0005975
Amo06g2264 487 Gene3D - 368 464 - -
Amo06g2264 487 Pfam Glycosyl hydrolases family 17 32 351 IPR000490 GO:0004553|GO:0005975
Amo06g2264 487 PANTHER GLYCOSIDE HYDROLASE, FAMILY 17, X8 16 474 - -
Amo06g2264 487 SMART X8_cls 373 456 IPR012946 -
Amo06g2264 487 Gene3D Glycosidases 31 360 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo06g2264 Amo-Chr6 80423308 80426729 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo06g2264 14 460 Miscellaneous Gene Families AT1G64760 72.036 0.0 668
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo06g2264 - - gmx:100815300 781.941
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo06g2264 06 80423308 80426729 Amo20g3621 20 146758396 146760314 PCT
Amo20g3621 20 146758396 146760314 Amo06g2264 06 80423308 80426729 PCT