Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo20g3423 ATGATTAGCACTCCAACAGTACTAGTTATTCCATATCCAGCTCAGGGGCATGTAAACCCCATGATGAGCTTTTCACATAAGCTGGTTGATCATGGATGCAATATCATCTTTGTCAACTCAGACTTCAACCATAAGAGAGTGGTGAGATCCATGGAGAACAACAATGGTTCATCTTCACCAATAAAATTGGTGTCAATCCCAGATGGGTTGGGACCTGAACATGACAGAGTCAATTTAGGAGAGTTATCTGTTTCCATATTGAGGACCATGCCTTCAAAGCTTGAGAAGCTGATAGAAGATCTTCAAATGAATGAGGGCATTAAAGTAACTTGCGTTGTTGCTGATGTGTTCATGGGTTGGGCTTTGGAAGTTGCAAAGAAAGTGGGAATCAAAGGTGCATTCTTTTGGCCTGCGGCAGCATCAATGTTTGTGTTGCAGTATAACGTCCCCAAGCTTATTGCTGATGGCATCCTAGACACTCATGGGTCACCAACATCAACAACAAAGACCTTTTGGTTATCCTCTTGTATTCCAGCAATGGACATCAAAGTCATATGGTGGTTAAATTTGTTTGACTCTTTAGTTCAAGAGAGATTGTTTGAGTATGTGTTGCACTGCCTCCGAGATTCAGATAATGTAACTGACTGGTGGTTGTGCAATAGTACATATGAACTTGAACCACAAGCATTTTCTTGTGTGCCAAATTTATTGCCAGTAGGCCCATTATCCCGAACCTGTGATGATAATAATAAAAGTGTAGCTCCAAGATCCTTGGGACAATTCTGGGAAGAAGATTTGTCATGCATGAATTGGCTTGATCAACAACAAAACAATTCTGTTGTGTACGTAGCATTTGGTAGTATTGCTCTTTTCGACCAAAAACAATTTACTGAGCTAGCTCTTGGGCTTGAGCTGATGAACAGACCTTTCCTTTGGGTTGTTCGTCAAGATCCCAATTGCGAGAATAAGATATATTTTCCGGACGAATTTAAGGGGAATCGAGGTAAAATAGTTGGATGGGCTCCTCAACAGAAGGTGCTAAGCCACCCTGCCATAGCTTGTTTTGTAAGTCATTGTGGTTGGAATTCAACTGTGGAAGGTTTGACTAATGGAGTTCGCTTCTTGTGTTGGCCCTATTTTGCTGACCAATTTTTCAATCAAAGATACATTTGTGATGTATTAAAGGTTGGATTGGGATTTGATTTGGATGAAAATGGATTAATCTCACGTGGTGAGATTAAAGCCAAAGTGGATCAACTGCTTGATGATGAGAACACAACACCAAGGTCTCATAAGCTCATGGAGAAGTTAAAGCACAACATTGGAGAAAGAGGTGCTTCTTCAAGGAACTTAAACAGGTTTCTTACTTGGTTGAAACATTGA 1383 0.4056 MISTPTVLVIPYPAQGHVNPMMSFSHKLVDHGCNIIFVNSDFNHKRVVRSMENNNGSSSPIKLVSIPDGLGPEHDRVNLGELSVSILRTMPSKLEKLIEDLQMNEGIKVTCVVADVFMGWALEVAKKVGIKGAFFWPAAASMFVLQYNVPKLIADGILDTHGSPTSTTKTFWLSSCIPAMDIKVIWWLNLFDSLVQERLFEYVLHCLRDSDNVTDWWLCNSTYELEPQAFSCVPNLLPVGPLSRTCDDNNKSVAPRSLGQFWEEDLSCMNWLDQQQNNSVVYVAFGSIALFDQKQFTELALGLELMNRPFLWVVRQDPNCENKIYFPDEFKGNRGKIVGWAPQQKVLSHPAIACFVSHCGWNSTVEGLTNGVRFLCWPYFADQFFNQRYICDVLKVGLGFDLDENGLISRGEIKAKVDQLLDDENTTPRSHKLMEKLKHNIGERGASSRNLNRFLTWLKH* 461
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo20g3423 460 Gene3D Glycogen Phosphorylase B; 3 256 - -
Amo20g3423 460 PANTHER UDP-GLYCOSYLTRANSFERASE 83A1 4 459 - -
Amo20g3423 460 Gene3D Glycogen Phosphorylase B; 257 440 - -
Amo20g3423 460 PANTHER EG:EG0003.4 PROTEIN-RELATED 4 459 - -
Amo20g3423 460 Pfam UDP-glucoronosyl and UDP-glucosyl transferase 265 424 IPR002213 GO:0008194
Amo20g3423 460 ProSitePatterns EF-hand calcium-binding domain. 401 413 IPR018247 -
Amo20g3423 460 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 5 458 - -
Amo20g3423 460 CDD GT1_Gtf-like 7 450 IPR002213 GO:0008194
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo20g3423 Amo-Chr20 143616523 143621885 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo20g3423 2 459 Glycosyltransferase AT3G02100 44.516 1.86e-132 389
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo20g3423 - - ahf:114927331 619.772
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo20g3423 20 143616523 143621885 Amo20g3423 20 143616523 143621885 ECH
Amo20g3423 20 143616523 143621885 Amo10g2833 10 93347686 93352327 hybridization