Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo20g3306 GCCCATTATTATTATTGTAATTATTATCAGTCTGAATATAACATTAATAGAAAAATGAGCAAGTTCTTAGTGATATTATTATATGTCGTATGGTTAGCTGCTTCTGGGTTTGTTAATGGATCTATCATCAAGAAGGAGAAAGACCAAATTAGGGTCTTTGAATTAAAGAAGGGTGACCTTACTTTGAAGGTCACTAACTGGGGTGCCACACTTGTTTCCTTGGTACTTCCCGACAAATATGGAAAGTTGGGAGACATTGTTCTTGGATATGATTCTCCCGAGGCATACACTAACGATACAACATATTTTGGAGCTACCATTGGCAGGGTTGCTAACAGAATTGGAGGAGCTCAGTTTACATTAAATGGAATCCATTACAAATTAATTGCTAATGAAGGAAACAATACACTTCATGGTGGACCTAGAGGATTTAGTGATGTGCTTTGGAAAGTGATAAAGTATCAAAGAGATGGTGATAGACCCGAAATCAAATTCAGCTACCACAGTTTTGATGGTGAAGAAGGATTTCCCGGTGACCTATTGGTAACGGTGAGCTACATCCTAAGTGAAGAATCGAGTTTGAGCATAGTCATGAAAGCAAAAGCCTTAAACAAAGCAACACCAGTGAGCCTGGTTAACCATGCATATTGGAACCTAGGAAACCACAACAGCGGCAACATCCTTAACCAAGTTGTTCAAATCTTCGGGTCCAAATTCACACCGGTCGATGACAACCTCATTCCCACTGGAAACTTCTCGTCCGTCCAAGGAACCCCATACGATTTCCGTAAGCCACAAGTTGTTGGCTCTAGGATTGACCAGTTATCCAAGACCAATGGCTATGACATAAATTATGTTCTTGACAATGACGAGGATGAGATTAGGGTTGCGGCTATTGTCACGGATAAGAGGTCAGGGAGAGTGATGAAGATTGCGACGAATCAACCGGGATTGCAATTCTACACTGCGAATTCCGTGAAGAATGAGAAGGGGAAAGACGGGTTTGTGTATCAGCCGCGATCGGCGTTGTGTTTGGAGACTCAAGCGTTCCCTGACTCCGTCAACCATCCCAATTTTCCGTCAACGATTGTCACGCCGAGAAAGCCTTACAACCATCTTCTGTTCTTCAAATTCTCCACTACCGATGCTCCACCTGGTTTTTCAGAGTCATAA 1173 0.422 AHYYYCNYYQSEYNINRKMSKFLVILLYVVWLAASGFVNGSIIKKEKDQIRVFELKKGDLTLKVTNWGATLVSLVLPDKYGKLGDIVLGYDSPEAYTNDTTYFGATIGRVANRIGGAQFTLNGIHYKLIANEGNNTLHGGPRGFSDVLWKVIKYQRDGDRPEIKFSYHSFDGEEGFPGDLLVTVSYILSEESSLSIVMKAKALNKATPVSLVNHAYWNLGNHNSGNILNQVVQIFGSKFTPVDDNLIPTGNFSSVQGTPYDFRKPQVVGSRIDQLSKTNGYDINYVLDNDEDEIRVAAIVTDKRSGRVMKIATNQPGLQFYTANSVKNEKGKDGFVYQPRSALCLETQAFPDSVNHPNFPSTIVTPRKPYNHLLFFKFSTTDAPPGFSES* 391
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo20g3306 390 PANTHER ALDOSE 1-EPIMERASE 23 381 - -
Amo20g3306 390 PIRSF GALM 38 381 IPR015443 GO:0016853|GO:0019318
Amo20g3306 390 SUPERFAMILY Galactose mutarotase-like 45 379 IPR011013 GO:0003824|GO:0005975|GO:0030246
Amo20g3306 390 CDD galactose_mutarotase_like 53 378 - -
Amo20g3306 390 PANTHER ALDOSE-1-EPIMERASE 23 381 - -
Amo20g3306 390 Pfam Aldose 1-epimerase 52 372 IPR008183 GO:0005975|GO:0016853
Amo20g3306 390 Gene3D - 41 381 IPR014718 GO:0030246
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo20g3306 Amo-Chr20 141049934 141053709 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo20g3306 46 379 Miscellaneous Gene Families AT5G15140 55.389 7.35e-135 393
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo20g3306 K01785 - gmx:100779602 550.821
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo20g3306 20 141049934 141053709 Amo20g3306 20 141049934 141053709 ECH
Amo20g3306 20 141049934 141053709 Amo10g2673 10 91008987 91014952 hybridization