Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo20g3077 ATGGCAGGGTTTCAAGCTGAATATATTGATGACTATGATATTTTGAAGATATTTGCTGCTGAAGGTGTTGAGTTCCTTGTATCAAGTGAAGGGAAGGTACCCTTGTCGGAATGCGATGGGAAAATCATTTGCCTCTTTTTCTCTGCAAATTGGTGCAGACCTTGCAGAGCATTCATTCCCCATTTGATTGAACTCTATGGTACACTGAGAAAGAGAGGCCTAAATTTGGAGATTATCTTCATCTCTTTTGATCATGATGAGGATGGTTTTAAGGAACACTTGAAGAGTATGCCATGGCTAGCTGTCCCGTTTGATGCAAAGTTGCATAGAAGATTCATCAACAGATACCAAGTTGATCGAATCCCATCATTCCGTCCATTATATCCTGATGGAACGATAGTCGAAGACGATTTAATTGTGACCATTGAGGATTATGGTGCTGATTCTTTTCCCTTCACAAGGAAGAGATATGAGGAATTGAAAGCCAAGGATAGAAAGAAACGCGAAGAAGCAAATTTGGAGGAATTATTGGCAGACGAGGGACGCGACTTTCTTATCACTGGAGATGATAGAAAGGTACCAATATCTCAACTAGTTGGTAAAACTATAGGCCTCTACTTTTGTGCCTATTGGTCTCCTCCATGCCGCGCATTCACTGTCCAACTCATGGATTTATACAAAAATCTCAAGGCTGCAAAAGGTGACTGCTGCGAGGTTGTTTTAATCTCGACAGATAGAGACCTGAAGGAGTTCAATGTCAACAGAAGTAATATGCCATGGCTCGCCATCCCATACGAGGACAAAACTAGGCATGACCTTTGTAGGATCTTTGACATAAAAGGAATTCCGGCTTTGGTCTTTGTCGGACCAGATGGCAAAGTGACTAGTACCAATGGGAAGTTTATGGTCTCCTCATATGGTGCAGAAGCATTCCCCTTCACCGAATCACGGATAAGGGATCTAGAAGCAGCTCTTAGAAAGGAAGGAGAGGCTTTGCCGCAACAGTTCGAGGATGTCAAGCATGAACATGTGCTGAAGTTGGATATGGCCAAAGCATATGTATGTGATTCCTGTAAAGAGAAAGGGAAATTCTGGGCATTCTCTTGTGATGTTTGTGACTATGATCTACACCCAAGTTGTGTAGAAAAGGTCAACAAAAACTAA 1164 0.421 MAGFQAEYIDDYDILKIFAAEGVEFLVSSEGKVPLSECDGKIICLFFSANWCRPCRAFIPHLIELYGTLRKRGLNLEIIFISFDHDEDGFKEHLKSMPWLAVPFDAKLHRRFINRYQVDRIPSFRPLYPDGTIVEDDLIVTIEDYGADSFPFTRKRYEELKAKDRKKREEANLEELLADEGRDFLITGDDRKVPISQLVGKTIGLYFCAYWSPPCRAFTVQLMDLYKNLKAAKGDCCEVVLISTDRDLKEFNVNRSNMPWLAIPYEDKTRHDLCRIFDIKGIPALVFVGPDGKVTSTNGKFMVSSYGAEAFPFTESRIRDLEAALRKEGEALPQQFEDVKHEHVLKLDMAKAYVCDSCKEKGKFWAFSCDVCDYDLHPSCVEKVNKN* 388
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo20g3077 387 SUPERFAMILY Thioredoxin-like 25 138 IPR036249 -
Amo20g3077 387 Coils Coil 154 179 - -
Amo20g3077 387 PANTHER THIOREDOXIN 5 384 - -
Amo20g3077 387 Pfam Thioredoxin-like 40 124 IPR012336 -
Amo20g3077 387 Pfam Thioredoxin-like 200 294 IPR012336 -
Amo20g3077 387 CDD TryX_like_TryX_NRX 183 313 IPR045870 GO:0004791
Amo20g3077 387 ProSiteProfiles Thioredoxin domain profile. 14 162 IPR013766 -
Amo20g3077 387 Pfam C1 domain 340 381 IPR004146 -
Amo20g3077 387 SUPERFAMILY Thioredoxin-like 187 295 IPR036249 -
Amo20g3077 387 Gene3D Glutaredoxin 18 156 - -
Amo20g3077 387 Gene3D Glutaredoxin 177 315 - -
Amo20g3077 387 ProSiteProfiles Thioredoxin domain profile. 175 323 IPR013766 -
Amo20g3077 387 PANTHER NUCLEOREDOXIN 3-RELATED 5 384 - -
Amo20g3077 387 SUPERFAMILY Cysteine-rich domain 333 382 IPR046349 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo20g3077 Amo-Chr20 134602816 134605741 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo20g3077 K17609 - gmx:100778160 650.588
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo08g2039 08 32893025 32897385 Amo20g3077 20 134602816 134605741 hybridization