Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo08g2039 ATGCTCAAGCAATTCCTCAGCAAGCTTCCACGCAACAAGAAGCTCGACGTGGACTTGGACGAGTTGAGCCGGGTCGACTCATCCTCCAAGCCGAGCTCCTCTATGCACAACCTCGTTTCCCCATGTGCTGCGGGAAAAAACCACCACAACCGGTCCCATACCGCCACTGGTGGTGGTGGCAGCTCCTCCGCCGCGAAGCGCACGTCTTCGGTTTTTCCGACCAGCACCGTTTCGGGGATTGAACCCTTGGTCCCTTTCAAGGATGTCCCAAACTCAGAGAAGATGAACCTCTTTGTTAGCAAGCTCAGCCTCTGTTGTGTCACGTTTGATTTCACTGACCCCAGTAAAAACACCATGGAAAAGGATGTGAAAAGAAGAACTTTGATTGAACTTGTTGAGTTTGTGGCTTCTGGTTCTGTTAAATTCACTGAGCCTGCTATTCTAGCCATGTGTAGAATGTGTGCCTTTAACTTATTCCGTGTTTTTCCACCAAATTACCGGTCCGGCCGGTCGGGTGGCTCTGGTGGTGGAGGCAGTGGTGGTGGTGAGAATGATGATGATGAGCCCTCTTTTGATCCTGCTTGGCCACACTTGCAAATTGTGTATGATTTGTTGCTTAAGTTTGTTAGTTCTCCTTGCGTTGATGCAAAGGTGGCAAAGAAGTACATTGATCATTCATTCATTTCAAAACTGCTAGAGTTGTTTGATTCGGAGGATCCTAGGGAGAGGGATTGCTTGAAAACCATAATGCATAGGGTTTATGGTAAATTCATGGTGCACAGGCCTTACATGAGAAAGTCTATTAACAATTTGTTCTATAGGTTTGTGTTTGAGACTGAGAGGCACAATGGGATTGCTGAGTTGTTGGAGATCTTTGGGAGTATTATTAGTGGTTTTGCTTTGCCGTTGAAGGAGGAGCATAAGATCTTCCTTTGGAGGGTGTTGATCCCTTTGCACAAGCCAAAATCCATGGGGGTATACTTCCAGCAATTGTCCTATTGCATCACTCAGTTTATCGAGAAGGAGCCAAAGTTGGCGAGCACCGTGATTAGGGGATTGTTGAAGTATTGGCCTATAACCAATAGTCAGAAGGAGGTGATGTTCCTTGGTGAATTGGAGGAAATTTTGGAAGTTATTAACATGGTAGAGTTCCAGAGGGTCATGGTGCCATTGTTTTGGCGAATTGGATGCTGCATTAACAGTTCTCACTTTCAGGTAGCTGAAAGAGCCCTTTTCTTGTGGAACAACGACCACATTGTCAACCTGATCGCTCACAACCGTCAGGTAATCTTGCCGATCATATTTCCAGCATTAGATAGGAATTGTCAAGGCCATTGGAACCAGGCAGTTCTCAACTTAACTCACAACGTTAGGAAGATGTTTGTGGAGATGGACGAGAAGCTGTACATCTCCTGCCTCACTCAGTTCAAGGAGGAAGAAGCGCTGCTTAGCTTGGAAGCCGAGAAGCGGAAGGACGCCTGGAAACAGCTTGAGAAAGCGGCCAGTCTCCAGCCAGTAATTGGAAATACAGCTGTTTTAGTTTCTCCAATTTGA 1554 0.4646 MLKQFLSKLPRNKKLDVDLDELSRVDSSSKPSSSMHNLVSPCAAGKNHHNRSHTATGGGGSSSAAKRTSSVFPTSTVSGIEPLVPFKDVPNSEKMNLFVSKLSLCCVTFDFTDPSKNTMEKDVKRRTLIELVEFVASGSVKFTEPAILAMCRMCAFNLFRVFPPNYRSGRSGGSGGGGSGGGENDDDEPSFDPAWPHLQIVYDLLLKFVSSPCVDAKVAKKYIDHSFISKLLELFDSEDPRERDCLKTIMHRVYGKFMVHRPYMRKSINNLFYRFVFETERHNGIAELLEIFGSIISGFALPLKEEHKIFLWRVLIPLHKPKSMGVYFQQLSYCITQFIEKEPKLASTVIRGLLKYWPITNSQKEVMFLGELEEILEVINMVEFQRVMVPLFWRIGCCINSSHFQVAERALFLWNNDHIVNLIAHNRQVILPIIFPALDRNCQGHWNQAVLNLTHNVRKMFVEMDEKLYISCLTQFKEEEALLSLEAEKRKDAWKQLEKAASLQPVIGNTAVLVSPI* 518
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo08g2039 517 PANTHER SERINE/THREONINE PROTEIN PHOSPHATASE 2A PP2A REGULATORY SUBUNIT B 1 515 IPR002554 GO:0000159|GO:0007165|GO:0019888
Amo08g2039 517 SUPERFAMILY ARM repeat 96 497 IPR016024 -
Amo08g2039 517 Pfam Protein phosphatase 2A regulatory B subunit (B56 family) 85 501 IPR002554 GO:0000159|GO:0007165|GO:0019888
Amo08g2039 517 MobiDBLite consensus disorder prediction 47 68 - -
Amo08g2039 517 PIRSF PP2A_B56 7 514 IPR002554 GO:0000159|GO:0007165|GO:0019888
Amo08g2039 517 PANTHER SERINE/THREONINE PROTEIN PHOSPHATASE 2A REGULATORY SUBUNIT 1 515 - -
Amo08g2039 517 MobiDBLite consensus disorder prediction 22 68 - -
Amo08g2039 517 MobiDBLite consensus disorder prediction 26 40 - -
Amo08g2039 517 Gene3D - 90 500 IPR011989 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo08g2039 Amo-Chr8 32893025 32897385 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo08g2039 K11584 - gmx:100808283 796.964
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo08g2039 08 32893025 32897385 Amo20g3077 20 134602816 134605741 hybridization