Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo20g2877 ATGGCTTTCTCAGTCTTACCCTCCTCACCATCAATCAGAAGCTCCATTTCATGTCCAAGAAGCATGGTTGTTTCTAATAAAATGTCTGATAATAAAAATAATAATGTTGGAGAAGGGTTCCTTTCACCTCCAAACAAGGGCATCTACAAAAGCACCGTTGCGAGGGTTGCGAGTCGTCGGGCCACTCCGCTACCGGCTCCGTCAGTGGCGGAAGGGCACCGGCACCATAGCGCATGGACTAGTATCCGTCAAGAGAGATGGGAAGGGGAGCTGGTTGTTCAAGGAGAAATACCATTGTGGCTGAAAGGAACATACCTGAGGAATGGGCCAGGCATGTGGCACATTGGAGACTACAACTTCCGGCACCTCTTTGACGGTTACGCCACCCTCGTCAAGCTCCACTTCGAAGAAGGCCGGTTAATCGCCGGCCACCGCCAACTGGAGTCACAAGCCTACCAAGCCGCCAAAAAGAACCAAAAGATCTGCTACCGCGAGTTCTCGGAGGTACCAAAGGCGGAGAACTTCCTGGCATACGTGGGAGAATTGGCGAGCCTGTTCTCCGGCGCATCCCTGACGGACAACGCCAACACCGGAGTGGTGAGGCTGGGCGACGGCAGGGTGGTGTGCCTGACGGAGACACAGAAGGGGTCTATCGTGATAGACCCCGAAACACTGGAGACTAAGGGAAAATTCTCCTACAGCGATTCTTTGGGGGGTTTGATTCACTCGGCGCATCCGATTGTGACGGAGGAGGAGTTCTTGACTCTGTTGCCGGATCTGGTGAAGCCTGGCTACGTGGTGGCAAGAATGGAGAAGGGAAGTAATGAGAGGAAGGTGATTGGAAGAGTCAACTGTAGGGGTGGACCTGCACCTGGCTGGGTCCACTCTTTCCCTGTCACCCAGAATTATGTTGTTGTTCCCGAAATGCCCTTGAGGTACTCTGCTCAGAATCTTCTTAAGGCTGAGCCTACCCCTTTGTACAAGTTCCGCTGGTACCCTGACAACAATGCTTACATGCATGTCATGTGCAAGGCCACTGGCAACATTGTGGCAAGTGTGGAGGTGCCTCTGTTTGTTCAGTTCCATTTCATAAATGCATATGAAGAGAAAGATGAAGATGGAAGAGTTACGGCGATAATCGCCGACTGTTGTGAGCACAATGCAAATACCGACATTCTTGAGAAGCTCAGACTAAACAACCTTCGTTCCTATAATGGTGAAGATGTTCTACCCAACGCTAGGGTTGGTCGATTCCGAATACCATTTGATGGGAGTCCATATGGAACCTTGGAGGCAGCATTAGATCCAAATGAACATGGGAGAGGCATGGACATGTGCACCATAAACCCTAATTATTTAGGAAAGAAATATAGATATGCTTATGCTTGTGGAGCACATCGCCCTTGTAACTTTCCCAACACCATCACCAAGATTGATTTTGAGTTGAAAAAGGCTAAGAACTGGTATGAAGAAGGTACTGTGCCCTCGGAACCATTCTTTGTAGCTCGGCCGGGTGCAACCGAAGAAGACGATGGCGTGGTAATCTCAGTAGTTAGTGAGAAAAATGGAGGAGCATATGCGTTGGTGTTAGATGGTTCCACTTTTCAAGAGATTGCTAGGGCCAAGTTCCCTTATGCAATTCCATATGGGTTGCATGGATGCTGGGTTCCAAAAAATTAG 1680 0.4946 MAFSVLPSSPSIRSSISCPRSMVVSNKMSDNKNNNVGEGFLSPPNKGIYKSTVARVASRRATPLPAPSVAEGHRHHSAWTSIRQERWEGELVVQGEIPLWLKGTYLRNGPGMWHIGDYNFRHLFDGYATLVKLHFEEGRLIAGHRQLESQAYQAAKKNQKICYREFSEVPKAENFLAYVGELASLFSGASLTDNANTGVVRLGDGRVVCLTETQKGSIVIDPETLETKGKFSYSDSLGGLIHSAHPIVTEEEFLTLLPDLVKPGYVVARMEKGSNERKVIGRVNCRGGPAPGWVHSFPVTQNYVVVPEMPLRYSAQNLLKAEPTPLYKFRWYPDNNAYMHVMCKATGNIVASVEVPLFVQFHFINAYEEKDEDGRVTAIIADCCEHNANTDILEKLRLNNLRSYNGEDVLPNARVGRFRIPFDGSPYGTLEAALDPNEHGRGMDMCTINPNYLGKKYRYAYACGAHRPCNFPNTITKIDFELKKAKNWYEEGTVPSEPFFVARPGATEEDDGVVISVVSEKNGGAYALVLDGSTFQEIARAKFPYAIPYGLHGCWVPKN* 560
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo20g2877 559 PANTHER CAROTENOID CLEAVAGE DIOXYGENASE-RELATED 14 559 - -
Amo20g2877 559 PANTHER BETA-CAROTENE DIOXYGENASE 14 559 IPR004294 GO:0016702
Amo20g2877 559 Pfam Retinal pigment epithelial membrane protein 82 557 IPR004294 GO:0016702
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo20g2877 Amo-Chr20 129633473 129638877 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo20g2877 K17913 - gmx:100794831 913.294
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo20g2877 20 129633473 129638877 Amo20g2877 20 129633473 129638877 ECH
Amo10g2390 10 83115762 83120928 Amo20g2877 20 129633473 129638877 hybridization