Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo10g2390 ATGGCTTTCTCAGTCTTACCCTCCTCACCATCAATCAGAAGCTCCATTTCATATCCAAGAAGCATGGTTGTTTCTAATAAAATGTCTGATAATAAAATTAATAATGTTGGAGAAGGGTTCCTTTCACCTCCAAACAAGGGCATCTACAAAAGCCAACGCTCCCTTCAAGACTTGACCGTTGCGAGTGTTGCGAGTCGTCTACCGCCTCCGTCAGTGGCGGAAGGGCACTGGCACCATAGCGCATGGACTAGTATCCGTCAAGAGAGATGGGAAGGGGAGCTGGTTGTCCAAGGAGAAATACCATTGTGGCTGAAAGGAACATACCTGAGGAATGGGCCAGGCATGTGGCACATTGGAGACTACAACTTCCGGCACCTCTTTGACGGTTACGCCACCCTCGTCAAGCTCCACTTCGAAGACGGCCGGTTAATCGCCGGCCACCGCCAACTGGAGTCACAAGCCTACCAAGCCGCCAAAAAGAACCAAAAGATCTGCTACCGCGAGTTCTCGGAGGTACCAAAGGCGGAGAACTTCCTGGCATACGTGGGAGAATTGGCGAGCCTGTTCTCCGGCGCATCCCTGACGGACAACGCCAACACCGGAGTGGTGAGGCTCGGCGACGGCAGGGTGGTGTGCCTGACGGAGACACAGAAGGGGTCTATTGTGATAGACCCCGAAACACTGGAGACTAAGGGAAAATTCTCCTACAGCGATTCTTTGGGCGGTTTGATTCACTCGGCGCATCCGATTGTGACGGAGGAGGAGTTCTTGACTCTGTTGCCGGATCTGGTGAAGCCTGGCTACGTGGTGGCAAGAATGGAGAAGGGAAGTAATGAGAGGAAGAATTATGTTGTTGTTCCCGAAATGCCCTTGAGGTACTCTGCTCAGAATCTTCTTAAGGCTGAGCCTACCCCTTTGTACAAGTTCCGCTGGTACCCTGACAACAATGCTTACATGCATGTCATGTGCAAGGCCACTGGCAAGATTGTGGCAAGTGTGGAGGTGCCTCTGGTTGGTCGATTCCGAATACCSTTTGATGGGAGTCCATATGGAACCTTGGAGGCAGCATTAGATCCAAATGAACATGGGAGAGGCATGGACATGTGCACCATAAACCCTAATTATTTAGGAAAGAAATATAGATATGCTTATGCTTGTGGAGCACATCGCCCTTGTAACTTTCCCAACACCATCACCAAGATTGATTTTGAGTTGAAAAAGGCTAAGAACTGGTATGAAGAAGGTACTGTGCCCTCGGAACCATTCTTTGTAGCTCGGCCGGGTGCAARCGAAGAAGACGATGGCGTGGTAATCTCAGTAGTTAGTGAGAAAAATGGAGGAGCATATGCGTTGGTGTTAGATGGTTCCACTTTTCAAGAGATTGCTAGGGCCAAGTTCCCTTATGCAATTCCATATGGGTTGCATGGATGCTGGGTTCCAAAAAATTAG 1449 0.4962 MAFSVLPSSPSIRSSISYPRSMVVSNKMSDNKINNVGEGFLSPPNKGIYKSQRSLQDLTVASVASRLPPPSVAEGHWHHSAWTSIRQERWEGELVVQGEIPLWLKGTYLRNGPGMWHIGDYNFRHLFDGYATLVKLHFEDGRLIAGHRQLESQAYQAAKKNQKICYREFSEVPKAENFLAYVGELASLFSGASLTDNANTGVVRLGDGRVVCLTETQKGSIVIDPETLETKGKFSYSDSLGGLIHSAHPIVTEEEFLTLLPDLVKPGYVVARMEKGSNERKNYVVVPEMPLRYSAQNLLKAEPTPLYKFRWYPDNNAYMHVMCKATGKIVASVEVPLVGRFRIPFDGSPYGTLEAALDPNEHGRGMDMCTINPNYLGKKYRYAYACGAHRPCNFPNTITKIDFELKKAKNWYEEGTVPSEPFFVARPGAXEEDDGVVISVVSEKNGGAYALVLDGSTFQEIARAKFPYAIPYGLHGCWVPKN* 483
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo10g2390 482 PANTHER BETA-CAROTENE DIOXYGENASE 338 482 IPR004294 GO:0016702
Amo10g2390 482 PANTHER CAROTENOID CLEAVAGE DIOXYGENASE-RELATED 338 482 - -
Amo10g2390 482 PANTHER CAROTENOID CLEAVAGE DIOXYGENASE-RELATED 14 281 - -
Amo10g2390 482 PANTHER CAROTENOID CLEAVAGE DIOXYGENASE-RELATED 282 337 - -
Amo10g2390 482 PANTHER BETA-CAROTENE DIOXYGENASE 282 337 IPR004294 GO:0016702
Amo10g2390 482 PANTHER BETA-CAROTENE DIOXYGENASE 14 281 IPR004294 GO:0016702
Amo10g2390 482 Pfam Retinal pigment epithelial membrane protein 340 480 IPR004294 GO:0016702
Amo10g2390 482 Pfam Retinal pigment epithelial membrane protein 85 327 IPR004294 GO:0016702
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo10g2390 Amo-Chr10 83115762 83120928 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo10g2390 K17913 - gmx:100794831 685.256
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo10g2390 10 83115762 83120928 Amo20g2877 20 129633473 129638877 hybridization