Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo20g2860 ATGATTAGTATCTACATCCTTGACTACTGTATGGATGGTCAACTTGGCACTGACGGAGAGGACACACCTGATGAAAATTCTATTGGTGGAGTTTATAACCTAGCGCCCCACTTATTGAATAAGTTTCCCGAGTCGCACCCACTTGATTCTTCAACTGGTGTCTCTGAAGTACAAGGAAAAGGATCAATTAAGATACATGCTGTCAAAGCAGGAGGAATGATGTCTATGGCTATTGATAATCGTGGCACCCTCTGGATGTGGGGAAACTGCCCACAAGAAAGCAAAGGTGAATTCTCTCTTGTAAGTAGTTTCATTCCAATGCCAATACTGGCCTTTCATGGCCTTAATGTTGCCAAGGTTGCATGTGGAAATGAGCATGTTGTAGCATTGGTTAGTGCCGGAGAATCAAACAATGGTGAAGATTTGGTCTGCTACTCTTGGGGTTTTAACAACCATGGCCAGTTAGGATTGGGGGATAGGGAGAACAGGGCACATCCAGAAGTTGTGAAAACATTTGATGAGGAGTCCCCTTGGACAATTTATGACATAGCATGTGGTGCTGCTCACACTGCCTTGCTCACTCGCAAAAAGAAATCTACCGAGTTGGAAAGCAAGTGCTGGACTTTTGGCCTTGGGGATAATGGCCAACTCGGGCATGGAACAACACAAAGCGCATTATTTCCTACACCTGTTCAAGACTTGCCGCAAGATATATCTCTTATTGGTATCGATTGCGGCTTGTTTCATACAAGTGTGGTTTCCTCATCAGGGGATGTGTGGTCATGGGGAATGGAGAAGGGTCTTGGCTTATGCCCTGATGCTGGTCGTGGTTCATCAGATTCTGGTGATGCCCTCTCACCCTTGCTTAAACCTTGTGCTCCATACCAACCTAAGTTTCCAGATCCGGTTCAAGTTGCATGTGGAGCTGCACATACTGTTATTGTTGCGCGGGATGGATATAAGGTGTGGTCTTGGGGTAGAGGGCGATGTGGAGTTCTTGGAACCGGTAACGAATTGGACTGTTATACCCCCACCAAGGTGCGGTGGCCTCCAGCGACCGAAGATTCAGAGGAAGAGGAATCAAAGAGCTCCCTCGAGCAGGACAGAGAGAAAGAAAAGGAGGCCGAAGTAAAAACAGAAACAGATGAGAAATTATCCTCGGCACTGAATGAGCTGAAGCAGCTTCAATTGAAGCTATCCACAATGGAACAATATGCTAGCATACTTCATGGTTGTGTTTTCGGAAAACCTTTTGCTGAGCAAGATGTCCCTGCTTCATTGAAGGATTCAGGTTCATTCAACATTGCAAAAGAATGGGAGAACATGTTGGAGACTGCAGATCATAGGACGCTAATGAGGTTGGAAATGTTCTACCGGGACATGCTTGCTGGTGTGAAAGATAAACAAATGAAGAGAAGGATCAAGGAAATTGTAAAGGAGTGCCTCCAATCACCGGAGCCGAAAAATTAG 1470 0.4565 MISIYILDYCMDGQLGTDGEDTPDENSIGGVYNLAPHLLNKFPESHPLDSSTGVSEVQGKGSIKIHAVKAGGMMSMAIDNRGTLWMWGNCPQESKGEFSLVSSFIPMPILAFHGLNVAKVACGNEHVVALVSAGESNNGEDLVCYSWGFNNHGQLGLGDRENRAHPEVVKTFDEESPWTIYDIACGAAHTALLTRKKKSTELESKCWTFGLGDNGQLGHGTTQSALFPTPVQDLPQDISLIGIDCGLFHTSVVSSSGDVWSWGMEKGLGLCPDAGRGSSDSGDALSPLLKPCAPYQPKFPDPVQVACGAAHTVIVARDGYKVWSWGRGRCGVLGTGNELDCYTPTKVRWPPATEDSEEEESKSSLEQDREKEKEAEVKTETDEKLSSALNELKQLQLKLSTMEQYASILHGCVFGKPFAEQDVPASLKDSGSFNIAKEWENMLETADHRTLMRLEMFYRDMLAGVKDKQMKRRIKEIVKECLQSPEPKN* 490
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo20g2860 489 Pfam Regulator of chromosome condensation (RCC1) repeat 322 351 IPR000408 -
Amo20g2860 489 Pfam Regulator of chromosome condensation (RCC1) repeat 206 252 IPR000408 -
Amo20g2860 489 Pfam Regulator of chromosome condensation (RCC1) repeat 145 193 IPR000408 -
Amo20g2860 489 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 204 256 IPR000408 -
Amo20g2860 489 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 257 318 IPR000408 -
Amo20g2860 489 SUPERFAMILY RCC1/BLIP-II 56 350 IPR009091 -
Amo20g2860 489 PANTHER E3 UBIQUITIN-PROTEIN LIGASE HERC2-LIKE PROTEIN 19 486 - -
Amo20g2860 489 Coils Coil 378 405 - -
Amo20g2860 489 MobiDBLite consensus disorder prediction 351 382 - -
Amo20g2860 489 MobiDBLite consensus disorder prediction 344 382 - -
Amo20g2860 489 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 19 486 - -
Amo20g2860 489 Gene3D - 3 382 IPR009091 -
Amo20g2860 489 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 142 196 IPR000408 -
Amo20g2860 489 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 82 133 IPR000408 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo20g2860 Amo-Chr20 129357873 129361052 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo20g2860 - - gmx:100815199 690.649
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo20g2860 20 129357873 129361052 Amo20g2860 20 129357873 129361052 ECH
Amo10g2384 10 83029007 83033690 Amo20g2860 20 129357873 129361052 hybridization